3H0G,2PMZ


Conserved Protein Domain Family
RNA_pol_Rpb2_4

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pfam04566: RNA_pol_Rpb2_4 
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RNA polymerase Rpb2, domain 4
RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.
Statistics
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PSSM-Id: 398322
Aligned: 248 rows
Threshold Bit Score: 45.8102
Threshold Setting Gi: 123806322
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H0G_N           566 VFVNGVWLGV-HRDP--AHLTETLRSLRRRLDIS----AEVSIVRDIR-----EKELRLFTDAGRICRPLFIVD 627  Schizosaccharomy...
Q4A245           554 lHVNGTIVGYaITIDqiKEIATQMRSLRRHGNLP----FDCSISISN------DNSLFVNSDHGALLRPLIIrd 617  Emiliania huxley...
ABK78187         511 IFVDGRLIGY-YKDG--GGLADSLRDLRRSSKIH----PHVSISFNRPaedgaTRRLYVNCSAGRVLRPMIIIK 577  Cenarchaeum symb...
jgi:Nmar_0347    511 IFVDGRLIGY-YKDG--EQLAESLRDLRRNSKIH----PHVGVSFHKSeiegsTRRLYVNCNAGRVLRPLIIIK 577  Nitrosopumilus m...
imbp:Hbut_1573   534 VFLNGRLIGY-HPDG--EKLAEELRKLRRSGKLH----YEVSVSVYRTe---tINEVYINTDPGRIMRPVFVVE 597  Hyperthermus but...
Q9YAT8           553 VFINGRPLGY-HPNG--AELARKIRELRRSDKLEverpWEVSVYHLREg---eIDELYVNTDSGRLMRPVVVVE 620  Aeropyrum pernix
jgi:Calag_1499   537 VFLNGSPIGY-VENG--DELARKLRDMRRKGELS----FEVGISLIKEg---nTNEVYINTDEGRLLRPLIVVD 600  Caldisphaera lag...
CBRAS:ASAC_1175  544 VFLNGKPIGY-VQDG--AELRRKLIAMRRSGSLS----YEVSVAYIEQg---gIKEVYINTDEGRLMRPVIVVE 607  Acidilobus sacch...
jgi:Igni_0651    525 VFLNGRPVGY-YKDA--HELAQKIRQLRRQGKLH----YEVSVGVYENdd-gtIKEVYINTDPGRVMRPVFVVE 590  Ignicoccus hospi...
jgi:Pyrfu_0220   549 VYINGRLIGY-YPDG--EKLAQEIRRLRREGKLH----YEVNVAYYRD-----VNELYVNTDPGRVLRPLFVVE 610  Pyrolobus fumari...
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