Conserved Protein Domain Family
SSDP

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pfam04503: SSDP 
Single-stranded DNA binding protein, SSDP
This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.
Statistics
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PSSM-Id: 398282
Aligned: 15 rows
Threshold Bit Score: 103.119
Threshold Setting Gi: 964152076
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EDV91149      81 DHSSEAKAFHDYGFvssgygvngigpggphnagGPAPSP-LAQMPPgGDGgpmGPGGPMGP-NFFPnst-mrpSPPTha- 156 Drosophila grim...
XP_002402581  81 EHSSEAKAFHDYGFvnsgyav------ngiahnPSAPSP-LGQMPP-SDG---MPGGPMPPgGFFP-------------- 135 black-legged tick
XP_001954918  81 DHSSEAKAFHDYGFvssgygvngigpggphnagGPAPSP-LGQMPPgGDGgpmGPGGPMGP-GFFPnst-mrpSPPTha- 156 Drosophila anan...
OWR49908      81 EHSSEAKAFHDYGFvnsgygv-----ngighnaGPA--------PP-NDG---MGGGGMPP-GFFPnss-lrpSPPAphp 141 Danaus plexippu...
EFA11526      81 EHSSEAKAFHDYGFvnsgygv-----ngiahntGPAPSP-LGQMPP-ADG---MPGGPIPP-GFFPnst-mrpSPPThp- 147 red flour beetle
EGI69542      69 EHSSEAKAFHDYGFvnsaynv-----ngiahnaGPAPSP-IGQMPP-NDG---MPGGPMPP-AFFPnnstmrpSPPThp- 136 Panamanian leaf...
XP_001947875  81 EHSSEAKAFHDYGFvnsgygv-----ngiahnaGPSPSP-LGQMPP-NDG---MPGGPMPG-GFFPnss-mrpSPPShp- 147 pea aphid
4_pfamImport   1 EHSSEAKAFHDYSA-------------------AAAPSPvMGNMPP-SDG---MPGGPMPP-SFFQ-------GPPG--- 46 
Q9BWG4        82 EHSGEAKAFQDYSA-------------------AAAPSPvMGSMAP-GDT---MAAGSMAA-GFFQ-------GPPG--- 127 human
1_pfamImport   1 EHSSEAKAFQDYST-------------------AAAPSPvMGSLAP-ND--------AMAP-SFFQ-------GPPS--- 41 
EDV91149     157 sS------PQPPP---------------------SQMMP---GQPp---FMgGPRYPGGPRPGVRMQGMgnefnGP---P 200 Drosophila grim...
XP_002402581 136 --------VSPLPhrfscfldcgnlslvlfdaslTMLFL---SQP----FM-SPRYPGGPRPGVRMPQQvd-fnPPggvP 198 black-legged tick
XP_001954918 157 sS------PQPPP---------------------SQMMPg--QPP----FMgGPRYPGGPRPGVRMQGMgnefnGP---P 200 Drosophila anan...
OWR49908     142 gSqpsphgPQPQ-----------------------LMGT---GQP----FI-GPWYSGGPRTAVRM-GMgndfnGP---P 186 Danaus plexippu...
EFA11526     148 sSqps-phSQPPPp-------------------hTQMMS---AQP----FM-GPRYPAGPRPGVRMPQIasdfnGP---P 196 red flour beetle
EGI69542     137 sSqpspqhPQPPPp-------------------hTLSLM---KNHlfrcFM-GPRYPAGPRPGVRMPQMgndfnGP---P 190 Panamanian leaf...
XP_001947875 148 sAqqs-phSQPPs--------------------hGQMLS---NQP----FM-GPRYPGGPRPGIRMSQLgndfnSP---T 195 pea aphid
4_pfamImport  47 -Sqps-phAQPPPhnp----------------snPMMGPh--SQP----FM-SPRYPGGPRPSLRMPNQ-----PPvgvP 96 
Q9BWG4       128 -Sq-------PSPhnp----------------naPMMGPh--GQP----FM-SPRFPGGPRPTLRMPSQ-----PPaglP 171 human
1_pfamImport  42 -Sq-------PPPpqp----------------phPDDGAswhCQT----FN-ACIFGGGPSESSCLPC-----------P 81 
EDV91149     201 G-QPM-MPNSMDPT-RPgp--------ggGMGPMNPRMNPPRGp---gMGPM--GYGGPgGMRgPAPG---GP-Gg---- 256 Drosophila grim...
XP_002402581 199 G-QPM-MPNSMDPT-RQgkfs-----sppTMNPMNPRMNPPRGq---pLGPMnpGNYG--GMR-PPPNstmGP-Ggp--- 260 black-legged tick
XP_001954918 201 G-QPM-MPNSMDPT-RPg----------gGMGPMNPRMNPPRGpg--gMGPM--GYGGPgGMRgPAP----GP-Gg---- 254 Drosophila anan...
OWR49908     187 G-QGM-MSNSLERG-SGml--------------ggPRMTPPRp----gMGPMspGAYAA-GMRgPPPQ---AP-G----- 235 Danaus plexippu...
EFA11526     197 G-QPM-MPNNMDPT-RQgp---------pGMNPMN-RMNPPRGp---sMGPLgpGTYGP-SLRgPPPNsslGP-Gg---- 254 red flour beetle
EGI69542     191 G-QPM-MPNSMDPT-Rqg---------ppGMNPMNPRMNPPRGp---gMGPMgpGSYGP-GMRgPPPNstlGP-Ggpggp 253 Panamanian leaf...
XP_001947875 196 G-QPM-MPG-MDPL-RQgeageyvvgwqgGMGPMNPRMNPPRGqntqnMSPL--GSYSP-GMRgPPPNttlGPgGggggp 268 pea aphid
4_pfamImport  97 GsQPL-LPNSLDPT-RPqg--------hpNMGGPM-RMNPPRG-----MAGMgpQSYGG-GMR-PPPNslgGP-G----- 152
Q9BWG4       172 GsQPL-LPGAMEPSpRAqg--------hpSMGGPMQRVTPPRG-----MASVgpQSYGG-GMR-PPPNslaGP-G----- 229 human
1_pfamImport  82 GeSPIsLKCSCSPP-RPpg--------hpSMGGPMQRVTPPRG-----MAGVgpQSYGS-GIR-PLPNslaGP-G----- 139
EDV91149     257 -MPPMGMgGGGGRPPQWQPNA------SAPMNaYSSSSPGN-YGPGP-GSNGPPGpgTPIMPSPQDNTQGgpvggpGDSM 327 Drosophila grim...
XP_002402581 261 sMPPMP--GPGGR--PWQPNA-------SSMN-YSSASPGShYGGPPvSGSGPPGpgTPIMPSPQDSSNSg-----GDGM 323 black-legged tick
XP_001954918 255 -MPPMGMgGAGGRPPQWQPNA------SAPLNaYSSSSPGN-YGPGP-GSNGPPGpgTPIMPSPQDNTQGgpvggpGDSM 325 Drosophila anan...
OWR49908     236 -MPPMGM-GPRGA---WAGGSggagggSAPLN-YSGGSPGA-YGAPP-GSNGPPGppTPIMPSPQDSSNSg-----GDNM 302 Danaus plexippu...
EFA11526     255 pMPPMSMtGPGGR-PQWQPNT------STPMN-YSSSSPGN-YGGPP-GSAGPPGpgTPIMPSPQDSSNSg-----GENM 319 red flour beetle
EGI69542     254 gMPPMSMaAPGGR-QQWQPNT------STPMN-YSSSSPGN-YGGPP-GSTGPPGpgTPIMPSPQDSSNSg-----GENM 318 Panamanian leaf...
XP_001947875 269 nMP-LSMgGLVGR-PQWQPNA------NTPMS-YSSSSPGA-YGGPS-GSGGPPGpgTPIMQSPQDSSNSg-----GESM 332 pea aphid
4_pfamImport 153 -LPGMNM-GPGGRGPWPNP-N------ANSIA-YSSSSPGN-YVGPP-GGGGPPG--TPIMPSPGDSTNS------SENI 212
Q9BWG4       230 -LPAMNM-GPGVRGPWASP-S------GNSIP-YSSSSPGS-YTGPP-GGGGPPG--TPIMPSPGDSTNS------SENM 289 human
1_pfamImport 140 -LPALNM-GPGVRGPWASP-S------GNSIP-YSSSSPGS-YTGPP-GGGGPPG--TPIMASPGDS-NS------SENM 198
EDV91149     328 YSLMKP--------EFPMggggpdgsgggggggGPGGMGPMggGPNS----MGPvlNGGGGGPDGTGLDGM-------KN 388 Drosophila grim...
XP_002402581 324 YAMMKP---------FQMgpg---------gpdGP--MGSM--GPDM----GPPvmNGMSSA--GDGLDGM-------KN 368 black-legged tick
XP_001954918 326 YALMKP--------EFPMgggpdg----gggggGPGGMGPMggGPNS----MGPv-LNGGGGPDGTGLDGM-------KN 381 Drosophila anan...
OWR49908     303 YTLMKPvgaa-lgaEFPL-------------------AGEH--GPSSqhlpQPPtsEGLG------GVDGM-------KA 347 Danaus plexippu...
EFA11526     320 YTLMKPavggnmpgEFQMg-------------gGP-EGGPM--GPMG------P--NSMGPVLNGDGMDGM-------KN 368 red flour beetle
EGI69542     319 YTIMKPvpggnmpgDFPMsgg---------pegGP--MGPM--GPNT----MGPvlN-------GDGLDGM-------KN 367 Panamanian leaf...
XP_001947875 333 YTMMKPvtggnmpgDFPMnna---------sdsGP--LGPM--GPNT----MNSvlN-------GEGLDGM-------KN 381 pea aphid
4_pfamImport 213 YTMMNPigpggnrpNVSS---------------GPRRDVTGgtGPg----gVDN--QKSSVNARKTQMEGKpplslstQS 271
Q9BWG4       290 YTIMNPigqgagraNFPL---------------GPGPE-----GPMAamsaMEP--HHVNGSLGSGDMDGLp------KS 341 human
1_pfamImport 199 YTIMNPigpsasraNFPL---------------GPGPE-----GPMAamsaMEP--HHVNGSLGSGDMDGLp------KS 250
EDV91149     389 SPA-----NGGPGTPREDS 402 Drosophila grimshawi
XP_002402581 369 SPA------NGPGTPREDG 381 black-legged tick
XP_001954918 382 SPA-----NGGPGTPREDS 395 Drosophila ananassae
OWR49908     348 SPGgv--gGGGPGTPREDS 364 Danaus plexippus plexippus
EFA11526     369 SPA-----NGGPGTPREDS 382 red flour beetle
EGI69542     368 SPA-----NGGPGTPREDS 381 Panamanian leafcutter ant
XP_001947875 382 SPA-----PGGPGTPREDS 395 pea aphid
4_pfamImport 272 SPNnmagmNNPPGTPRDDG 290
Q9BWG4       342 SPGavaglSNAPGTPRDDG 360 human
1_pfamImport 251 SPGavaglSNAPGTPPHDG 269
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