6H57


Conserved Protein Domain Family
HA2

?
pfam04408: HA2 
Click on image for an interactive view with Cn3D
Helicase associated domain (HA2)
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Statistics
?
PSSM-Id: 398214
Aligned: 372 rows
Threshold Bit Score: 55.7109
Threshold Setting Gi: 255077163
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6H57_A         879 AIQLLQYLGAL-------------------DNKEMITEDGKKMSLFPLSPRFSKMLLVS--DekACLPYIVAIVSALS-- 935  Saccharomyce...
XP_006695658  1055 AVTMLQRMGALd------------------GE--ELTALGQQLALIPADLRCAKLMVYGaiF--GCLDECVCIAAILS-- 1110 Chaetomium t...
XP_014170679  1109 ALLLLRRMGILggn--------------taSN--TLTSLGKLVAAIPADLRCAKLMVYGalF--GCLHPCVTMAAILSsg 1170 Grosmannia c...
EPE07879      1143 ALSLLRRMGILiqvhda--------dgkssTD--HLTALGKQLAVIPADLRCGKLMVFGalF--GCLHECVTVAAILS-- 1208 Ophiostoma p...
XP_008112005   531 AVGYLKHQGAL-------------------DAEESLTPIGSLLAELPVDVVIGKMLVLG--TlfGLAAPTLTAAAVLS-- 587  green anole
XP_002948574   606 SITNLKQIGAL-------------------NRSEKLTPLGAVLSLLPVDVSIGKLLVLG--CvfGLAGPTLTLAAALS-- 662  Volvox carte...
EIM21925       490 ALDRLYLIGAI-------------------NKKKELTSLGKVLLQLPIEAPIGKLILYAtfF--RCLDPALSLAAILT-- 546  Wallemia mel...
XP_001747335   722 ALKALRQLHALd-----------------kEE--NLLPLGHHLAQLPVAPKIGRMLVFAamL--QCLKPISVIAASLS-- 778  Monosiga bre...
19_pfamImport    1 AVHELVNIAALrtvsdssknklrqdiqsidDEDVVLTPLGNHLATLPLDARIGKFLVYGsiL--RCIQPVAIIAACIS-- 76  
XP_002903713  1084 AVQELVDIAALrtvgespk----nklrgnnDEEVILTPLGNHLAMLPLDARIGKFLVYGsiL--RCIEPVAIIAACIS-- 1155 Phytophthora...
6H57_A         936 -VGDPFINEFELGineisrkpnpdenlddkirehdestpgmdpelkkeLRSKFYKSRSQFSKLDkf---sDVFRL 1006 Saccharomyces cer...
XP_006695658  1111 -TKSPFLAPVEKReeaka-------------------------argrfTRGGTTAs--------------DGDLM 1145 Chaetomium thermo...
XP_014170679  1171 rAGGPFVSVPPDRrqeak-------------------------aarmrFAAPGTAa--------------DGDLL 1206 Grosmannia clavig...
EPE07879      1209 -GRSPFVVPPTPEkrela-------------------------kaarmKFTSASAg--------------DGDLL 1243 Ophiostoma piceae...
XP_008112005   588 -VPSPFLRSS----------------------------------------SGRSDPDCATARRPlesplgDPLTL 621  green anole
XP_002948574   663 -VQSPFLKLG----------------------------------------DEEHDQEAKAARAAlvsphgDALTL 696  Volvox carteri f....
EIM21925       547 -NRDPFVAPLDLRaeana--------------------------akqkWSQREYKs--------------DPFTI 580  Wallemia mellicol...
XP_001747335   779 -FKDPFSAPIDKQkvmd---------------------------qrrrAMAPEAMs--------------DHITL 811  Monosiga brevicol...
19_pfamImport   77 -SRNPFLTSVSDPemrakq------------------------dalkrELGGSWKs--------------DHLLL 112 
XP_002903713  1156 -SRNPFLMSMSDPelrakq------------------------dalkkELGGSWKs--------------DHLLL 1191 Phytophthora infe...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap