Conserved Protein Domain Family
Caroten_synth

?
pfam04240: Caroten_synth 
Carotenoid biosynthesis protein
The representative member of this family is CruF, a C50 carotenoid 2',3'-hydratase involved in the synthesis of the C50 carotenoid bacterioruberin in the halophilic archaeon Haloarcula japonica.
Statistics
?
PSSM-Id: 398085
Aligned: 61 rows
Threshold Bit Score: 101.114
Threshold Setting Gi: 503323731
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
CCQ34222                50 FNPYLVLFGTAVMRLPLIagvaPLVD-RRAALAIVGLTLYTYGIEFLGVLTGLPYGDFEYVIDLGPMLLDTVPAALPIFF 128 Halor...
WP_013898243            17 hhSLISIFFIIFLSIPCFlavlVWLGtKKGLFLLIIMGLYALVLETMAIITGIPYSEFYYTEMIGTKLFGTTPFTVPFAW 96  Metha...
Q1ATY1                  33 gAWLLSLAAVAAIAAPPLaallRLFGpARWLAALALLSAFAFAVESLGVATGWPYGRFYYGEGLGPLLGGLVPYLLPVSY 112 Rubro...
WP_008414756            57 MNPYLLIGANLVMVSPLVaglvPLLD-RRALVGLGVLALFTWGIELVGVLTGLPYGAFSYGVELGPMLFDLVPLGLPVFY 135 Halal...
WP_020445794            54 FNPYLMVAAVTIMALPLAsgiaPIVD-RRAAVGLLALAAFTWAIELVGVQTGLPYGEFTYERELGPMVFGDVPLALPIFF 132 Salin...
jgi:Halru_1197          49 FNPLLVLVGTAVMRLPLIagllPVVD-RRLVGVLLGLTGYTYAIEYIGLTTGWPYGEFQYAVALGPMLGG-VPVALPLFF 126 Halov...
jgi:Htur_2702           72 YNPLLILFGTLVMRSPLVvgllPRVD-RRALAYLGLVTAYTYAIELVGVRTGWPYGAFEYGIQLGPMLFGEIPLALPLFF 150 Halot...
ADD04587                83 YNPLLLLFGTAVMRSPLLvgllPRIG-WWALGCLGVLTAYTYAIEIVGVRTDWPYGAFEYTIQLGPMLLGEVPLALPLFF 161 Natri...
PRJNA71415:HALLA_16015  75 YNPLFLLFGTAVMRSPLVvgllPRID-RRALGLLAFLTAYTYAIEMVGVRTDWPYGAFEYSIQLGPMLFGEVPLALPLFF 153 Halos...
ELY80625                85 YNPLLILFGTLVMRSPLVvallPQVD-RRATLPLAVLIAYTYGIELLGVRTGWPYGTFEYGISLGPMLGGEVPLALPLFF 163 Natri...
CCQ34222               129 FPLVLNAYLLCLLLLGDRAALTRVR-----------LPAVVATVLAMDLVLDPGAVGLGFWEYAPPLagdglwasataiH 197 Halor...
WP_013898243            97 LPLFIGSLYLASEI----------RinhqrpelwqiVLLTTFLLLMTDLVLDPAAVALQFWIWKEPG------------M 154 Metha...
Q1ATY1                 113 VPLVVGAVAAARHPRSrp----------------lwTLRSAALLTLIDGVLDPGAALLGFWVWPGGG------------P 164 Rubro...
WP_008414756           136 FPILLNSYLLALLVLD--SPSFLRR-----------FAFTLGVVIALDLILDPGAVALGFWGWADPG------------G 190 Halal...
WP_020445794           133 VPILLNSYLLGILVLGDRADRLAIR-----------FPTVVALVVVLDLVLDPGAVALDFWGWTDPG------------V 189 Salin...
jgi:Halru_1197         127 LPLVLNATLLSTLLTDSKSTNWPVR-----------LGGAVLAVLTIDLVLDPAAVSIGFWAYDGAG------------P 183 Halov...
jgi:Htur_2702          151 LPLVLNAFLLTLLILEGWSARPLVR-----------IPTAIAVVVAVDLVLDPAAVAIGFWAYVPPG------------S 207 Halot...
ADD04587               162 IPLVLNAYLLTLLVLGERHRNPVLR-----------LAGAVTAVIAVDLVLDPAAVAIGFWEFTPAG------------V 218 Natri...
PRJNA71415:HALLA_16015 154 VPLVLNAYLLTLLVLEELADSALVR-----------LPVAILAVVAVDLVLDPGAVAIGFWAYDPAG------------S 210 Halos...
ELY80625               164 VPLVLNAYLLTLLALGDRVARLVPR-----------LLGAIAAVVAVDLVLDPAAVAIGFWSYVPPG------------G 220 Natri...
CCQ34222               198 FYGVPLSNYLGWILSASVAVLA----FDLGFQR--AGLLDRLDRTGFMLDDLVSFVILWGVINAWYGNWLAVGVAGLFGA 271 Halor...
WP_013898243           155 FYGVPLMNFIGWGISGLVAAVIgigiTRYELREn---------kPPALASSLLLIMFFWTGVCVYMKLLIPAFLGILLIA 225 Metha...
Q1ATY1                 165 YYGVPASNYLGWLLSGAVSSAV----LVLLWPRgsPA-------PPALLDGTLLALAFWTGVAAFGGLALPAALGVALLA 233 Rubro...
WP_008414756           191 YYGVPAVNYLGWLLSGSVAIAI----LQVAFDH--EAVRDRLERCGFFLDDLVSFLVLWGLINASVGNWIPVVVALGLVg 264 Halal...
WP_020445794           190 YYGVPVINFLGWILAATVAVGI----LTVAFDH--DAIVSRLETCPYLLDDLINFGIFWGLVNVAAFNLVPALVATGILL 263 Salin...
jgi:Halru_1197         184 YYGVPLSNYLGWLLSGTIAVVA----LEYGLRT--DHLRTRLRSCEFALDDLVSFVVLWGGINALYGNWIPVCLTGALVg 257 Halov...
jgi:Htur_2702          208 YYGVPASNYVGWLLSGTVAVLL----VDRAFDR--AALLERVRTCEFVLDDLVSFVVLWGAINVLYGNWLAAGVAGLFCL 281 Halot...
ADD04587               219 YYGVPVSNYLGWLLSGTIAVVL----VDLAFDR--EALLERVRSCEFILDDLVSFVLLWGSINLLYGNWIPAAIAGLFCL 292 Natri...
PRJNA71415:HALLA_16015 211 YYGVPVSNYLGWLLSGTVAVVL----VDIAFDR--SALRARVDDCEFVLDDLVSFVLLWGTINVLYGNWLAVGVALLFGG 284 Halos...
ELY80625               221 YYGVPLSNYRGWLLSGTVAVVL----VELAFDR--RALVDRVRACEFALDDLVSFVLLWGAINLLYTNWLAAGVAGAFCL 294 Natri...
CCQ34222               272 GL 273 Halorhabdus tiamatea SARL4B
WP_013898243           226 Fi 227 Methanosalsum zhilinae
Q1ATY1                 234 AF 235 Rubrobacter xylanophilus DSM 9941
WP_008414756           265 tl 266 Halalkalicoccus jeotgali
WP_020445794           264 Vl 265 Salinarchaeum sp. Harcht-Bsk1
jgi:Halru_1197         258 al 259 Halovivax ruber XH-70
jgi:Htur_2702          282 Gl 283 Haloterrigena turkmenica DSM 5511
ADD04587               293 Gl 294 Natrialba magadii ATCC 43099
PRJNA71415:HALLA_16015 285 Gl 286 Halostagnicola larsenii XH-48
ELY80625               295 GL 296 Natrinema pellirubrum DSM 15624
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap