6K0A,2K3R


Conserved Protein Domain Family
Rpr2

?
pfam04032: Rpr2 
Click on image for an interactive view with Cn3D
RNAse P Rpr2/Rpp21/SNM1 subunit domain
This family contains a ribonuclease P subunit of humans and yeast. Other members of the family include the probable archaeal homologs. This family includes SNM1. It is a subunit of RNase MRP (mitochondrial RNA processing), a ribonucleoprotein endoribonuclease that has roles in both mitochondrial DNA replication and nuclear 5.8S rRNA processing. SNM1 is an RNA binding protein that binds the MRP RNA specifically. This subunit possibly binds the precursor tRNA.
Statistics
?
PSSM-Id: 397926
Aligned: 274 rows
Threshold Bit Score: 36.5022
Threshold Setting Gi: 209556196
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6K0A_G               17 IDILMSLAEEeAKKGNWDRAKRYVYLARRI---AMKMRI-R-------FPKKWKRRICKKCGTFLLYGRNARVRI----- 80  Methanoc...
XP_009154516          9 TKFLHNSARM-ILLSSPSTSRYLAHQSVEL---DYAQSTkS---------SSSAETVCAACGNLLLPGWTASTRI----- 70  Exophial...
XP_002376529         10 LGFLKDAASS-LDSLSPSTAAHLMTVHNKI---FYDESR-P-------LNQRQQEASCGACGSIRAPESTKTIHI----- 72  Aspergil...
GAA84105             10 LEFLKGSASA-LNALSPSTAAYLMTVHNGI---LRDEFK-P-------LNQRLQETSCGACGSVRSPQWTKNIVI----- 72  Aspergil...
XP_018228476         16 FWYLSHTALL----SSFELSAYFMSVFHER---ARHYEV-T-------LPDVLTTSACPSCGTVWVPGWTCSIRL----- 75  Pneumocy...
WGS:AFWA:PNEG_00761  15 LSY--SALPF-----SFELSSYFMSVFYEN---IRHHGI-S-------LSEIHDKTACLSCGMIWIPGWTCTIRL----- 71  Pneumocy...
CBJ29737             45 MDFLWRASNC-LRLVSPAVSRIYSDQLRKL---CAEYEA-RrpgsgplLPEWVSDSLCNSCGGILTPGITCRIRVrhrsl 119 Ectocarp...
XP_002903720         16 FTFLWSSAHT-LLPTSPTLANHMIATMMQL---ARSSRA-Q-------LPQPVLDFICKNCGGLLVPSVSADARV----- 78  Phytopht...
3_pfamImport          2 FSFLWSSAHR-LLPTSAALANHLIASMMQI---ARTSRA-Q-------LPQSVLDFICECCGGLLVPSMSADVRV----- 64 
XP_002173755          4 AQYLLNAAAF-LRSQDVTLSNDYVLKMYDIldeENQEKA-----------PEMMKIACRSCGSLLVAGANCSTRT----- 66  Schizosa...
6K0A_G               81 --------------KS-KRYPHv----------------------------------vITCLECG 96  Methanocaldococcus jann...
XP_009154516         71 -----------------VTRTTattskttsr------------------snnrkkilsRRCATCQ 100 Exophiala dermatitidis ...
XP_002376529         73 -------------------KKKiikrssa----------------------asdgaivYKCLRCR 96  Aspergillus flavus NRRL...
GAA84105             73 --------------HKkKGKQSnagraska---------------------ssdgatiLKCLRCR 102 Aspergillus kawachii IF...
XP_018228476         76 --------------QR-SSAKRywrqkkairak--------------qpppqlnywvqYCCQRCH 111 Pneumocystis jirovecii RU7
WGS:AFWA:PNEG_00761  72 --------------RR-SSAKRywhqkrtkme-----------------ypklnywveYKCQRCD 104 Pneumocystis murina B123
CBJ29737            120 aspsvkkakaktrvEK-TNTNKcrn------------------------------evvTTCLTCG 153 Ectocarpus siliculosus
XP_002903720         79 --------------VP-QTLKSpanrrltrqqrciqqqn--gsngprlarealstivrVTCHRCQ 126 Phytophthora infestans ...
3_pfamImport         65 --------------VS-QSRQSpsnrrlarhqrrahkrlsstesgrrlicatlstivrVTCHRCR 114
XP_002173755         67 --------------RS-TTRKHrtdlkpsek-------------------armqaqllVQCFTCQ 97  Schizosaccharomyces jap...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap