1WPB


Conserved Protein Domain Family
YfbU

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pfam03887: YfbU 
YfbU domain
This presumed domain is about 160 residues long. It is found in archaebacteria and eubacteria. In Corynebacterium glutamicum Ycg4L it is associated with a helix-turn-helix domain. This suggests that this may be a ligand binding domain.
Statistics
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PSSM-Id: 397806
Aligned: 19 rows
Threshold Bit Score: 177.869
Threshold Setting Gi: 119525996
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WPB_A         10 EMTNAQRLILSNQYKMMTMLDPANAE------RYRRLQT-IIERGYGLQMRE-LDREFGEL-KEETCRTIIDIMEMYHAL 80 
Q9CKV5          2 EMTSTQRLILANQYKLMGLLDSQNAQ------KYQRLEA-IVKGGFALELKE-LDKEFSDV-SEQECQTVLDTLEMYNAL 72  Pasteurella mu...
A6VLS1          2 EMTTTQRLILANQYKLMGLLDPANAK------TYARSEA-IVRGGFSLELKA-LDNEFNNL-SVEECQTVLDTLEMYKAL 72  Actinobacillus...
tigr:AHA_0893   2 NMSHTERLILSNQYEILAKLNPEKAA------FYQRAST-IIERGYCLQILE-LEKSFGHL-DLATCQEVIDTLELHHAL 72  Aeromonas hydr...
WP_012729345    2 NMNHAQRLILSNQYEILSKLNPEKAD------YYHRCKT-IVERGYCLQMLE-LEKEFGHL-TEEECREVIDILEMHHAL 72  Tolumonas auensis
Q72FI6          2 KLTAVERLIIANQHQILELIDAENAD------NHKLCRE-AIERGYLEDYYWiTNTSILNEpSSDVIDVVRNTLNMFDWL 74  Desulfovibrio ...
Q60310          1 mLSKIERLILANQYKILKIL--ENTS------EYDEIIK-ILEEGYEIFYDEiLGHIFDEL-PESEGQFVLDILSFYDIV 70  Methanocaldoco...
CDF00776        2 KLSLKEKWIIYNQLEILKLLNPDDAK------YYEEQIG-VLENGCEKDCNE-LFSFLQGT-PNEVASEVYDILDMFRIL 72  Ruminococcus s...
jgi:Namu_2683  59 RIF--ERQALSLLHRILARVLPEDANeddgdpDYQLMRArLLEAGFAGSYWYeVAGFSTEL-SKRDCGRVSDILQMFRII 135 Nakamurella mu...
WP_011780466   59 RIT--DRQTLSLLHRILARVLPEDAKdedgdaEYQLRRArVIESGFTGEYWReVAGFRTEL-SKRDCGRVLDLLDMFRAI 135 Mycolicibacterium
1WPB_A         81 H--VSWSNL--QDQQSId--ERRVTFLGFDAAT--EARYLGYVRFMVNVEGRYT---HFDAG-THGFNAQTPMWEKYQRM 148
Q9CKV5         73 Q--TSYNNLsdK--SALt--PHRLQFAGYCAVR--EKKYLNYLRFITGVEGKYQ---EFMRC-EHGCDSQVPMWDKYMRM 140 Pasteurella mu...
A6VLS1         73 Q--VSYNNLtdK--AEVt--EHRLKFAGYCAVR--EKKYLNYLRFITGTEGKYQ---EFMHC-EHGCDSQTPMWDKYTKM 140 Actinobacillus...
tigr:AHA_0893  73 A--ISWGNLeaADQGEIn--ASRLEFNGYSRSQ--ERELADYVCFLLEVDKRFP---ELKCP-CDELSSDIAMRDKYQRM 142 Aeromonas hydr...
WP_012729345   73 K--VSYENLsaEDQTQLs--PSRLDFIGYARGY--EKELADYVCYLLDVEKRFP---DLGKC-CAGLNSEIAMHDKYERM 142 Tolumonas auensis
Q72FI6         75 QrlLGVDDGknI--------PSNALFDGFDGNT--EDDHFAYMEFFLQGSHGSPryeSLKWTkPKDHNSHAPMVHIYERM 144 Desulfovibrio ...
Q60310         71 V--EPYKQKnpNDHEIIn--HPYSYFKGFDGNS--ETKYMAFVRFLIEDQKKFSfvaKYAKK-TDNFNSHFPMLDKYRKM 143 Methanocaldoco...
CDF00776       73 N--NSYNKLsnV--TDIe--KDDVLFSGFDGNE--EPSHYNYAKWLIEGRNLYK---EFANC---ELNSHYNRLDYYREM 138 Ruminococcus s...
jgi:Namu_2683 136 T--FSIDHLakAGVLVDdelSYHLEFGGFDHNDalEGQMASYVDFLMRDSRWTElkpQINRH--DNGNSHTLMLDTYLRM 211 Nakamurella mu...
WP_011780466  136 T--YSIKRLeqQGTTASkelRYQLEFRGFDHNDglEGHMASYVEHLMSDGRWAElqpQLKRH--DDGNSHHRVLDTYTRM 211 Mycolicibacterium
1WPB_A        149 LNVWHA-C--------PRQYH---LSANEINQIInA 172
Q9CKV5        141 LDVWHA-C--------PHGYH---LSMTEIQNILnA 164 Pasteurella multocida subsp. multocida str. Pm70
A6VLS1        141 LDVWRN-C--------PHGYH---LSIQEIQKILnA 164 Actinobacillus succinogenes 130Z
tigr:AHA_0893 143 LTVWRQ-C--------PRQYK---LSIQEIRKVLaA 166 Aeromonas hydrophila subsp. hydrophila ATCC 7966
WP_012729345  143 LAEWRE-C--------PRQYK---LSIQEIRNIVtA 166 Tolumonas auensis
Q72FI6        145 LTVWEDlS--------KDGYDh--LTEEDAHKVLsv 170 Desulfovibrio vulgaris str. Hildenborough
Q60310        144 VELWESkY--------NKKYD---LKREEILDILnA 168 Methanocaldococcus jannaschii DSM 2661
CDF00776      139 LYRFNT-I--------NAKKNtqlLTLEEIKSIIr- 164 Ruminococcus sp. CAG:624
jgi:Namu_2683 212 LSEFRRiMdgrkrgsgRLDYL---LSCEELKRIVdA 244 Nakamurella multipartita DSM 44233
WP_011780466  212 LAQHRRiKdsrsrgfdPDDYL---LSIDELEQIA-A 243 Mycolicibacterium
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