1A6C


Conserved Protein Domain Family
Nepo_coat_C

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pfam03688: Nepo_coat_C 
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Nepovirus coat protein, C-terminal domain
The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure.
Statistics
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PSSM-Id: 397650
Aligned: 21 rows
Threshold Bit Score: 121.283
Threshold Setting Gi: 75569132
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1A6C_A    349 FSSSELY-NWFTLTNLKPDAntgvVNFDIPGYIHDFASKDATVTLASNPLSWLVAATGWHYGEVDLCISWSRs-KQAQAQ 426  Tobacco ringspot ...
Q9IV56    980 LVAEIGS-LWCRVTSFLKED----VDIPIRARIYDIAAKDCTLELATNPFSKMIAATGFLEGQVTLSVSWSTn-VEASKI 1053 Olive latent ring...
ABF70682  264 SFEDDYF-VWVDFSEFTLDK----EEIEIGSRFFDFTSSTCRVAMGENPFAAMIACHGLHSGILDLKFQWSLn-TEFGKS 337  Grapevine fanleaf...
Q6XFY6    157 TFPNDYF-LWVDFSAFTVDE----EEYVIGSRFFDISSSTSTVALGNNPFAHMIACHGLHCGTLELKFMWSLgtTTYGGS 231  Grapevine deforma...
P24819    344 SFPNDYF-LWVDFSSFTVDV----EEYVIGSRFFDISSTTSTVALGDNPFAHMIACHGLHHGILDLKLMWDLe-GEFGKS 417  Arabis mosaic virus
Q80JS8    347 IGLIREF-NWATINNFKSDD----IAFAIPARLSDLVLTCGEVTMSTNPLALLIGSCGFFRGNLTIVLEWATf-LKAGDK 420  Blackcurrant reve...
Q86631    418 IATRLQF-LWASFSGFAPVVpeapRTWMIPCRLSDYKVEGATLKMEAHPLARLVASRGMFQGTMRFILRWTF----ASSL 492  Cherry leaf roll ...
Q65624    386 IGNVLLF-NWATISEMTNLT-----RFQIPARLSDLVLPGQTVTMRRNALANLIRSCGFFRGRVTFVFQWTLn-VAHIVP 458  Blueberry leaf mo...
Q9ELS0    148 LQYSEMScNWAEISAIVGTG----QTIIVPNHICDWKLSNATVALKNNPLSAIFGACGYFRGKLEMSLTWTAn-GKLSDA 222  Apricot latent ri...
ABN45885  348 IAGEQQF-NWCSFRNFKIDD----WRFEWPARLPDILDDKSEVLLRQHPLSLLISSTGFFTGRAIFVFQWGLn-TTAGNM 421  Tomato ringspot v...
1A6C_A    427 EGSVSITTNYRDWGAYWQGQARI------YDLRRTEAEIPIFLGSYAGATPSG--ALGKQN---YVRISIVNAKDIVALR 495  Tobacco ringspot ...
Q9IV56   1054 KGHIIFVVYDADLVNSFDGASTV------VPMAKGSFKCLLNCKTSARGTTSA--DPSLLTa--WMMIKVHHAKDIQELR 1123 Olive latent ring...
ABF70682  338 SGSITITKLVGDKAMGLDGPSQI------FALQRLEGTTELLIGNFAGANPNS--HFSLYSr--WMAIKFDQAKSVKTLR 407  Grapevine fanleaf...
Q6XFY6    232 SGSVIFTKLCGDKATGLDGGSEV------IALQELSHTTSMYIGNFAGVNPNT--ALSLYSr--WFAIKLDKARSMKILR 301  Grapevine deforma...
P24819    418 SGGVTITKLCGDKATGMDGASRV------CALQNMGCETELYIGNYAGANPNT--ALSLYSr--WLAIKLDKAKSMKMLR 487  Arabis mosaic virus
Q80JS8    421 EGTVQLTTCRGMIDDVKGVRNAIqkk-vvNLSLVGSISRYLNVGDFTGYAQSG--GQVGYDe-iFLEFSTNKAKQIRYLN 496  Blackcurrant reve...
Q86631    493 TTPTTYVQLVHKFGTTTSSESYL------------------------------------------TKLRHASQSTVLNLD 530  Cherry leaf roll ...
Q65624    459 TATMQILTAVGRVGNAETNGSQIlqswivPVSQVFEKEVEMDLTDYPGFNTSG--GIGADHdqpYIDIACGNFPQIFYMN 536  Blueberry leaf mo...
Q9ELS0    223 GSRLWIGKCWGDPKRAEVLESTVt-----NVYIPGSCSFVLDVGDYTGCNKPGnmPASLTNetqHINIWVEDGSKIGNLQ 297  Apricot latent ri...
ABN45885  422 KGSFSARLAFGKGVEEIEQTSTVq-----PLVGACEARIPVEFKTYTGYTTSG--PPGSMEp--YIYVRLTQAKLVDRLS 492  Tomato ringspot v...
1A6C_A    496 VCLRPKS-IKFWGRS 509  Tobacco ringspot virus
Q9IV56   1124 VNVIPQTgFKFYGRS 1138 Olive latent ringspot virus
ABF70682  408 ILCKPRPgFSFYGRT 422  Grapevine fanleaf virus
Q6XFY6    302 VLCRPIGdFNFYGRT 316  Grapevine deformation virus
P24819    488 ILCKPRGnFEFYGRT 502  Arabis mosaic virus
Q80JS8    497 INVELDEnFELYGRT 511  Blackcurrant reversion virus
Q86631    531 VVVAGLGgF-MRLRS 544  Cherry leaf roll virus
Q65624    537 INVRVHPgFELYGRS 551  Blueberry leaf mottle virus
Q9ELS0    298 LSIRLLPgFAFYGRS 312  Apricot latent ringspot virus
ABN45885  493 VNVILQEgFSFYGPS 507  Tomato ringspot virus
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