Conserved Protein Domain Family
UPF0172

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pfam03665: UPF0172 
Uncharacterized protein family (UPF0172)
In Chlamydomonas reinhardtii the protein TLA1 (truncated light-harvesting chlorophyll antenna size) apparently regulates genes that define the chlorophyll-a antenna size in the photosynthetic apparatus. This family was formerly known as UPF0172.
Statistics
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PSSM-Id: 397639
Aligned: 81 rows
Threshold Bit Score: 138.145
Threshold Setting Gi: 303290094
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001463238                    7 SVVASPEAYTKALLHCYKYPAQPVMGMLVGKRLSDDAgaaaqssgspssphtscgaasgtssstCYVSDAVPLFHtlPMT 86  Leishmania infantum JPCM5...
Q93568                          4 QVETQALPYSTIILHCLKYPAKGVFGLLIGNKKGDK----------------------------VTVTSCVPLCH--EST 53  Caenorhabditis elegans...
EFC44219                        4 tifSESSPYFKSLFHSFKFPFAPINGVFIGKRKDDKT---------------------------VEITDCVPLCHstSSI 56  Naegleria gruberi...
Q55FM0                          4 NISITTEALSKAHLHSFKHHASSVNGILLGKADKNS----------------------------ILITDIIPLFH---TQ 52  Dictyostelium discoideum...
EFA75467                        3 EITISLQSFLKIHSHSFKYCTNAVNGILLGYVEKSV----------------------------LNITDVIPLSH---SM 51  Heterostelium album PN500...
XP_004360071                    6 NIEVTIEAFKKIHSHSFKYLESAVNGILLGTVQKDSS---------------------------IIVNDIIPLFH---NG 55  Cavenderia fasciculata...
EEA05323                        2 EVSLSEKAFGKMAMHSLKYPKCPVDGILLGYEEDQV----------------------------IKVTDVIPLFH---SP 50  Cryptosporidium muris RN66...
WGS:AAGF:cds.TTHERM_00295640A   7 kqAIELLAYKKAYLHALKYVKDDVIGVLTGKIENGQ----------------------------ITVEDAYPLFH---SR 55  Tetrahymena thermophila SB210...
Q8IHW7                          5 EITIDDGAYAKIFMHSIKYSCDDVCGILIGKYLSSNEkk-----------------------kkCLITNYIPLFH---TH 58  Plasmodium falciparum 3D7...
EOR03627                        5 mSSINTRVHSKIIAHAAKYPEAAINGVLIGRIEANE----------------------------VEIIDAVPVQH--LWN 54  Wallemia ichthyophaga EXF-994...
XP_001463238                   87 APHPMLEVAYAHVQYAAKT---T----GQSLLGVYIA----NERLT-DNGVSP-LTKK-MLDALQA-RLP--TSTRLLvw 149 Leishmania infantum JPCM5...
Q93568                         54 PLAPPLELATALVHGK------F----GASLVGVYFS----NATPS-DTSLNV-YATR-LADRISSvTSS--AAILVQ-- 112 Caenorhabditis elegans...
EFC44219                       57 CTTPLVEMALIQIDRIIGD--------DLTIVGYYFGtd-yAELSS-DFTVPS-IHTS-IFTKISE-NFP--GALLWM-- 119 Naegleria gruberi...
Q55FM0                         53 TLLPMFEVAMIQIEKYCRD---N----NIDMVGYYHS----NQCIAnELEPEP-IAKK-IADRLNN-ELN--NMCFLMis 116 Dictyostelium discoideum...
EFA75467                       52 TLLPMFEVALIQIEAYCKI---N----QIEMIGYYYA----NENTF-EKDLEP-IAKR-VADKLYN-ELN--SMCFLGvt 114 Heterostelium album PN500...
XP_004360071                   56 TLLPMFEVAMIQIEEYCKV---N----QIDMVGYYHI----TDNLS-EKEVDP-MAKK-ILEKLSN-ELH--TFCFITiv 118 Cavenderia fasciculata...
EEA05323                       51 RLYESISLALLFIEEYCIEivqKgllnKFQLIGYYYDeefsQLQGAlNTESQVdTRCSlILEKILQ-NND---AAVFVrm 126 Cryptosporidium muris RN66...
WGS:AAGF:cds.TTHERM_00295640A  56 VVSPTLETAFELIEGALKK---K----KQIIVGLYEA----LSHPYqAKYLSE-ISTR-ILEKIQK-NLSkqPIALRI-- 119 Tetrahymena thermophila SB210...
Q8IHW7                         59 ILSPYLNLAFTLVENYYKD---K----DERIIGYFHI----SSDDSkNSDIENiKVCElISEKLIK-NYN--DAFVCL-- 122 Plasmodium falciparum 3D7...
EOR03627                       55 TLSVVMEMGLEMIHTHARS---K----GMDLVGMYEA----SEILEqNPTLSS-TGIQ-ILNRIKM-NAG--NSKHVVgv 118 Wallemia ichthyophaga EXF-994...
XP_001463238                  150 fVSNecltspPTGLAitslTADRcscnktislpsQASADERmtfGRWNSDTLAPEATVSa----eSVMESVSNALD---A 222 Leishmania infantum JPCM5...
Q93568                        113 -VMN------ERLvsdce------------qdrlVAYEKDG---DSWKETKTIFQGS--------NFLRGLQAVIQ---K 159 Caenorhabditis elegans...
EFC44219                      120 -LED------KKLnqlsk------------smvfKTYQLKSsklvpcdc---------dikglqeSDFQTLADHLE---K 168 Naegleria gruberi...
Q55FM0                        117 kIEVnrps-----------------------glvSIDKVG----SDWLKNRKTLITIDTtsn-seDINEILKRNLQ---N 165 Dictyostelium discoideum...
EFA75467                      115 eINEdnpl-----------------------gliPIGRNNE---NQWVKSSIKQLRLTGdkqspsYPKSMIQAHVK---D 165 Heterostelium album PN500...
XP_004360071                  119 eLDNdnqs-----------------------gliSLSSNGNslaKQQDVKVVGQPSFD-------TLKQTLKQILT---E 165 Cavenderia fasciculata...
EEA05323                      127 kRDQ-------------------------------LFTRDCltaSKMKSKQQFENISL-------SVCSNSSNILRavkD 168 Cryptosporidium muris RN66...
WGS:AAGF:cds.TTHERM_00295640A 120 -YDE---------DKqdqqEEIQeyhyltcegykFDLKDSKnidANYEKIQELNPQNGF------AKFEIIKNDIS---Q 180 Tetrahymena thermophila SB210...
Q8IHW7                        123 -LEF------SKYvnded------------nclnIFMKNDK---SNWEKGNVVISN---------KNKEFLKKNIS---N 168 Plasmodium falciparum 3D7...
EOR03627                      119 aVGG------------------------------------StedKQWKGYTLHSFKATNsqs-lsKVTLPVANVDTakiK 161 Wallemia ichthyophaga EXF-994...
XP_001463238                  223 FAHYRIADLEDHLEDPSITYLEQPL 247 Leishmania infantum JPCM5
Q93568                        160 KLYRELSDFENHLDNPEFDFYNTNL 184 Caenorhabditis elegans
EFC44219                      169 STFDSLVDFEIHTDNPSLDYFNKSL 193 Naegleria gruberi
Q55FM0                        166 IKESQIYDFEEYLSNPTRDWLNKSL 190 Dictyostelium discoideum
EFA75467                      166 GKLTQFNDFEDYLNNPTLDWLNRPs 190 Heterostelium album PN500
XP_004360071                  166 HKETKLNDFEDYLSNPTLDWLNKPL 190 Cavenderia fasciculata
EEA05323                      169 MQYFHLYDFEDHLLNPSLNWFNPNL 193 Cryptosporidium muris RN66
WGS:AAGF:cds.TTHERM_00295640A 181 NKHRFIVDFDAHFEDISLDFTNSFl 205 Tetrahymena thermophila SB210
Q8IHW7                        169 QHYLNIYDFDDHLNSMKCDFMNPDL 193 Plasmodium falciparum 3D7
EOR03627                      162 TLVDYLNDLDNHLSNNSLDWMENrd 186 Wallemia ichthyophaga EXF-994
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