2Q0O,4LFU,3QP8,2UV0


Conserved Protein Domain Family
Autoind_bind

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pfam03472: Autoind_bind 
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Autoinducer binding domain
This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.
Statistics
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PSSM-Id: 397509
Aligned: 93 rows
Threshold Bit Score: 63.5412
Threshold Setting Gi: 167348509
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2Q0O_B         19 DGHM-IKIALRSFAHSCGYDRFAYL---------QKDGTQVRTFH-SYPGPWES---IYLGSDYFNIDPVLAEAKRRRDV 84  Sinorhizobium ...
WP_012178222   22 SIEE-AWALHCTRMAEYGFDRLFYGhtrfstpstYADRHDALILS-SLPQGYVE---RYLREGHYRNIPMIRWAEKNDGA 96  Dinoroseobacte...
jgi:Caul_2116  15 CPAQaFRATLGDAARLCGFSQAAYMhlghrlprpEDSDAAAMETPrELISSGGLdeaLYRKRGYLAFDPLAVRAAKAFLP 94  Caulobacter sp...
Q63MI1         45 rratfdvadcDARLRAAGFTTLCYGafe----liGQQMLAAYLLRdFAPASFLR---AYVEGRLFEVDPRFAEWRQGVSP 117 Burkholderia p...
jgi:Geob_2418  27 NKTG-IKNIVDSLSSLVAIDNAVFGiaq---igtNGLIQTYDVMNiSYPEEWLI---TYKRKNFCQVDPIAKENFSNFEL 99  Geobacter dalt...
Q28PZ4         12 TVED-LWSHHTKTLASYGFDRVFYGfnafrgaglYDNPEDALLLT-NMPTDYVE---AYVDGGMFRDGVMMRWATENVGA 86  Jannaschia sp....
WP_011749960   15 STAA-VWQHYFARLASLGFPNVSYRavrileppcGRMLDDGVLLS-SYSPYLMQ---ELASLDLFESAPMHRWIIQNRGS 89  Paracoccus den...
WP_013067547   13 dVAT-IWSMHCAQMAKFGFDRLIYGftrfratqnLGSLDDTLILS-NHDPAYLN---SFLGAGLFSEAPMVKWALDSVGA 87  Rhodobacter ca...
Q1GHC1         15 TIEE-LWRAHVQQMSRYGFDRLLYGytlfktrtsLGDPDDFVILT-NHCPEYLQ---GFLADGLYAHAPMLTWALENEGH 89  Ruegeria sp. T...
Q5LRZ6         13 TLEE-LWDGHTRQMAEYGFDRLLYGytnyrtatsLGDPEDFVILT-NHDQSYID---GFMQEGLYFHAPMLHWALEHEGA 87  Ruegeria pomeroyi
2Q0O_B         85 FFWTADAWPARG---SSPLR--RFRDEAISHGIRCGVTIPVEGSYGSA-MML-TF-ASPERKVDISGVLDp-KKAVQLLM 155 Sinorhizobium ...
WP_012178222   97 CSWSEVYARLHPdemTPGTR--KALGTRQAFGIENGYSISFRNLCQGGfAAI-SLvGREGLSQADLDKIWasRGAEIELA 173 Dinoroseobacte...
jgi:Caul_2116  95 FAWSLADLA------DPNAR--PLARAFEAWGVRSGLIVPVQDSTAGP-ALVnFL-HAESQSRAALDAGAeaARDGLALL 164 Caulobacter sp...
Q63MI1        118 IAWRLDELDAHAr-rTGERRmhALVNSLRAHAMHSGVIFCWPVPHLDLrVAV-SL-ASEAHDGSLDDR----VIGCALAL 190 Burkholderia p...
jgi:Geob_2418 100 QFWEDTYKK------WNPPK--EFISAARDFNLYNGIACGVRNLKSTE-GSLfSV-AGKLENHPR-------EKFIIENL 162 Geobacter dalt...
Q28PZ4         87 ASWRDVYMAMANdapSKGEL--AMRAMNEKHDITAGYTISFPMAIKNAnAGI-GMaVKKGMGQDEADAIWreHGEDIETI 163 Jannaschia sp....
WP_011749960   90 ESWDWMQRCRLAgrlSPREE--RAMDVFARYGHVAGYAVGMGDDVERIrAGV-IVsGTIGMRQDRLDALWaqHGRLVGAL 166 Paracoccus den...
WP_013067547   88 CSWRVVAERMAAgelTEGER--RVIDLNRRFQVLAGYSIGFPDTSARAkGAI-GLcAQPGLTQADVDAIWeeHGRDLRVL 164 Rhodobacter ca...
Q1GHC1         90 ASWRVSQEMAAQgllDKQAR--KVQDFNQSMGVHAGYTISFNSASERFkGAI-SLaARADLDQDGIDQIWaeHGADIVLM 166 Ruegeria sp. T...
Q5LRZ6         88 GSWRMISDMLDSetlTPQER--RVYAFNAEHGVTAGYTVSFTSVSARTkGAI-SLcARKGMSQDEVDALWrtHGQDILLM 164 Ruegeria pomeroyi
2Q0O_B        156 MVHYQLKI 163 Sinorhizobium fredii NGR234
WP_012178222  174 NRVFHLVV 181 Dinoroseobacter shibae
jgi:Caul_2116 165 TAARLHAA 172 Caulobacter sp. K31
Q63MI1        191 SLDVHRAa 198 Burkholderia pseudomallei
jgi:Geob_2418 163 TPHLHTAF 170 Geobacter daltonii FRC-32
Q28PZ4        164 CHVAHLCI 171 Jannaschia sp. CCS1
WP_011749960  167 SGVMHLRI 174 Paracoccus denitrificans
WP_013067547  165 NSIMHLKI 172 Rhodobacter capsulatus
Q1GHC1        167 NNVAHLKI 174 Ruegeria sp. TM1040
Q5LRZ6        165 NNVAHLKI 172 Ruegeria pomeroyi
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