Conserved Protein Domain Family
Glycoprotein

?
pfam03409: Glycoprotein 
Transmembrane glycoprotein
This family of proteins has some GO annotations for positive regulation of growth rate and nematode larval development. This is probably a family of membrane glycoproteins.
Statistics
?
PSSM-Id: 397466
Aligned: 49 rows
Threshold Bit Score: 281.06
Threshold Setting Gi: 308264865
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
CAP29863      36 GADLYL-ASKDSNEYLKNIQITT--GGSSITLDSL-NGFNAD--SSPKRLRIIDTMTVSTTNNNTISSWLGGNLYVTTKA 109 Caenorhabditis ...
2_pfamImport   1 TFGIYVsAYSDTANVLKQIFVVTd-DQKQISLYDLkSKKLFQtsGELQPYPVTQSAYVTTSLSSKQLSSLNGVMFVSTSK 79 
XP_002636244  39 PCGIYVsAASDNTATLQNIFVVQk-DGTKTSLYDIkSKTSN---GKMTPLVVIDTATLTTSLNTNVLKGLNGVIYLSLTA 114 Caenorhabditis ...
Q9XWE2        40 WCNIYIsAQSDDTSFLASVYIVTa-KNSKSLLNIMqDNLQNT--GEIQGYPVDPPAYLTTSLSDNEMKQLNGVIYLSSAG 116 Caenorhabditis ...
O62153        41 PFHMYLsAQSDSYSILRQIFLITe-DGSTT----LsSLTQYN--GQINPFVVEKSVYLTTTLNDDVMKTLNGVIFISSKK 113 Caenorhabditis ...
NP_001024314  45 PYNIYVsAHSDATSALQQISVVTe-SGTK-TLFELkQNLQAS--GEITGYPVLKPAYLTTTLSDNDLKRLNGVIYISSSK 120 Caenorhabditis ...
O61874        42 PYNFYVsADSDDANVLQQISVVTe-SGQK-TLLELkNNLQGY--GEITPFPVLQSAYLITALSNDVLEKLTGVIYLSSTK 117 Caenorhabditis ...
P91002        41 PYNIYVsADSDAEFILQQIFVITg-NEQNVTLLDLkKNLQAS--GEITAFPVQKSAYITTTLSDNELKTLNGVIYLSSRK 117 Caenorhabditis ...
XP_003115495  41 PFGIYIsAHSDSANLLSSMFIVTg-NGKQISLNELkNRKAADnpSELEPYTVDDTAYLTTALTKYQLSQLNGVMYIGIFN 119 Caenorhabditis ...
EFP08818      41 KVGVYLsAFSDSVDVLSKMYIISdnNATQVSLNDLkALRMVS--NELVPYTIDNTTYLTSSLSDEQIDQLTGVMFICSVK 118 Caenorhabditis ...
CAP29863     110 QADDPSFSVYVIKTEHNITMKSGK----TTAVILNTKLepFvyiDQPFKTSYVTGIQQSKDAVVNFKWGIPAYNWQSVDT 185 Caenorhabditis ...
2_pfamImport  80 QLNDKNFHVYDIDTNHLVNLSG-D----LTVVFLNTHI--D---TSPIHSTLISNWKQDENAIVFMYKQYPTDSAEQKNS 149
XP_002636244 115 QYNNKNFNVYDVSSTFNFNLKP-Vtv-eTLTLFLNTYR--G---TNPLQSSIISQWNQDPSSSSYIYAGIPQDQTESKNT 187 Caenorhabditis ...
Q9XWE2       117 QRVDSTFHVYDIYQARKMNIIA-Ng--ySTFLFLNSNM--Q---TKPSRSSIISDWNQIKGSSGLLYAGFPLDS-KVNVY 187 Caenorhabditis ...
O62153       114 KRADSCLGVYNIGHETGIgndn---iyvCTYLILNTSL--N--------KYVISQWSQDPTSKAYLYAGIPQDSPEPENT 180 Caenorhabditis ...
NP_001024314 121 QYADNTFHVYGVSKSQNINLQA-LgkvdTTILFLNTNM--G---TNPYKSTIISQWKQDSTALAYLYAGFPQDTAEGKNT 194 Caenorhabditis ...
O61874       118 QRADNNFHVYGVSAPQNIQLLG-LgnvnTTILFLNTYM--S---SNPVYSSTISQWHQNPNAVAFLYAGVPWDSIELKKT 191 Caenorhabditis ...
P91002       118 QRADTNFHVYGVSKSPNIILRGMGnl-nTTILFLNTIM--G---TNP--SSIISQWSQDSTAHAYLYTDFPLDTAEETNT 189 Caenorhabditis ...
XP_003115495 120 QLLNNNFFVMDISNAMNIKLQR-LgkinSTILFLNTNM--A---LNPYKSSVISQWKQNGDSSAYLYANYPMDTPETKNS 193 Caenorhabditis ...
EFP08818     119 QLGDINFHVKDASYSLTTHFLN-YgaadFTILFLNTNV--N---QFSNQSTTISQWEQNSGSSVYLYIGYPGDQPEEQNS 192 Caenorhabditis ...
CAP29863     186 NntFFKNPMDlkndtytglmflmlinnenlsfqPKLKFsRFFDHIEPLQI-GFEYWYIMANG-SITMQIENKF------- 256 Caenorhabditis ...
2_pfamImport 150 Q--IFANPII-----------------------GYDWN-KFSPTVETFSL-SFKSFYIKTHG-SLQFNIGPGYy------ 195
XP_002636244 188 Q--IFSNPVV-----------------------SDKFT-QYFSNVEKFTLaSTVAFYLRTSNgGPSFRVEPGSw------ 235 Caenorhabditis ...
Q9XWE2       188 P--IFSNPIT-----------------------IQNSE-VLFPNVETFSL-SLAAFYITTNN-GFSFKIKPGYy------ 233 Caenorhabditis ...
O62153       181 Q--IFSNPVH-----------------------TNEGD-FYFYYVNDFSL-SMTAFYVKRFN-NVFFVIDQENss----- 227 Caenorhabditis ...
NP_001024314 195 Q--IFSNPMH-----------------------TDKAD-LYFANVEKFSL-TLVAFYLKTYR-GVNFRIEPGYs------ 240 Caenorhabditis ...
O61874       192 Q--IFSNPMH-----------------------TDKAD-LYFANVEKFSI-SLPAFYLKTYR-GVNFKIEPGYt------ 237 Caenorhabditis ...
P91002       190 Q--IFSNPMH-----------------------TDKAD-LYFANVEKFSL-SLVAFYLKTYR-GVNFSIEPGY------- 234 Caenorhabditis ...
XP_003115495 194 Q--IFSNPMK-----------------------TDQTD-VFFSNVEKFSI-IMKSFYLKTFNgGPDFTVTPGYckwgimf 246 Caenorhabditis ...
EFP08818     193 H--VFSNPMK-----------------------FNGSD-VFFPNVEKFAL-TDVSFYFRTFKgGPNFKVDPGFf------ 239 Caenorhabditis ...
CAP29863     257 ----------ITDQNY-STTAATTTGLIVN--ELLFYPH-IVTFQPDYTRSGFAGFLVSAF-PENE--LWFTMSYD---- 315 Caenorhabditis ...
2_pfamImport 196 -----------DVNGK-TTTSYTTTGFYMKtaNQSDRTI-TIHTARDTKYTGKTGANTIGElSQ-GgkVDVGEYDNsniq 261
XP_002636244 236 -----------NIGES-TTSAYSTTGFFMRpqGKMDGTVtTVHIKRDTSYSGTSGANMLGSlEN-RgkVSVSYNDGas-a 301 Caenorhabditis ...
Q9XWE2       234 -----------NINGTnTTSVYSTTGFYMKpaGEDDSTI-VVNIENDIRCSGTSGASVVGHfPT-GgnVTVGFYNGma-k 299 Caenorhabditis ...
O62153       228 ---------nRVVNGS-WTRDVTSTGFYMKplGSADNTT-IVNIKRDTKHTGFSGANVVGNlPN-GgsVTVGFYGDgt-k 294 Caenorhabditis ...
NP_001024314 241 -----------SIDSS-TTTDVTTTGFYMKplEKDDSTI-TVNIKRDTRFSGASGANVIGNlTT-GgmVTVGFYEGas-k 305 Caenorhabditis ...
O61874       238 -----------SIDST-TTTNVTTTGFYMKpmGTVSSTI-TVNIKRDTRYPGASGVNVRGYvPT-GgkVTVGFYNGas-k 302 Caenorhabditis ...
P91002       235 ----------YSIDGK-RTSAFTTTGFYMKplARNASTI-TVNIKRDVRYSGASGANLLGH-VPKRgkVTVGFYNGd--- 298 Caenorhabditis ...
XP_003115495 247 faslreqlssDSIDRT-TTSAYTTTGFYMKqsGKIDSTM-TINTMRDTKYSGVTGANIIGSlPV-GgkVQVGEYDGas-k 322 Caenorhabditis ...
EFP08818     240 -----------NVDGS-VTTAYTTTGFYSKpvGEADSTK-TINTSRDTKYSGFTGANIIGFlPN-GgnVTYTEYDGds-h 304 Caenorhabditis ...
CAP29863     316 SSYTTIDFNGTSSIEDRSWAPEQA-RMLTIN--STNQVAGVFYCQYFSYAGDLLPmtsTSS---P--------------- 374 Caenorhabditis ...
2_pfamImport 262 YQDSTSFPPSTS--IFFWTSRTIG-ETFQIS--STNAQSGYFCVQYFVIQNSTPG---QTTvlpgrqt------------ 321
XP_002636244 302 YDDNT--VPNPF--FSPWSIPVIG-ENLKIS--ATSGESGYYYVQYFVLQGGKKG---SPTsgpgqietttkasgaptvp 371 Caenorhabditis ...
Q9XWE2       300 YEQSA--PPEDYPSYNPWTIPFIG-QHFKVS--STNGTAGQYYVQYFVNQRPPRQtt----------------------- 351 Caenorhabditis ...
O62153       295 YERTV--TPNTS--ITSWTIPYIE-RTFQVS--STNGKDGEYYVQYFVSEGSLNG---SIVtttSpppstts-------- 356 Caenorhabditis ...
NP_001024314 306 YEDSA--APNPF--CSPWSIPYIL-QNMKIWstSSNPKNGQYFVQYFIAQGAIGS---GTTsr----------------- 360 Caenorhabditis ...
O61874       303 YEQSA--PPNEF--LSAWSIPYIA-PMFKVSstSSNSLAEQYFVQYFVAQGAMNG---GTTskp---------------- 358 Caenorhabditis ...
P91002       299 SKYEESFPPSYY--FSPWSIPYIDfETFKVSstSSNSTAEYYFVQYFVAQGTLFG---SPTsg----------------- 356 Caenorhabditis ...
XP_003115495 323 NEFSI--PPDDS--IVPWSAPVIG-QNIQIS--SENGAPGQYYVQYFVFQGQLST---GATslp---------------- 376 Caenorhabditis ...
EFP08818     305 HSYTV--QSVNQ--LFSWSTPFIG-QTFQIT--SRGTRNGEFYVQYFVHQGSLSD---VPTtvtPtt------------- 361 Caenorhabditis ...
CAP29863     375 ----TTSMRGSTGMTTNTTI-VSTTTVGTTTS-GA 403 Caenorhabditis briggsae
2_pfamImport 322 ---taqhggPTLPPVTSQPGhQTSSHLETTTKiNS 353
XP_002636244 372 npgaPTVPNPGAPTVPNPGApTVPGRVETTTK-SS 405 Caenorhabditis briggsae
Q9XWE2       352 -------------------------pPETTTK-SA 360 Caenorhabditis elegans
O62153       357 -------------kfrieaTtTSKFRIEATTR-ST 377 Caenorhabditis elegans
NP_001024314 361 -------------------------pgQTTTR-SS 369 Caenorhabditis elegans
O61874       359 --gqPTVPQPTLPGPTLP-YpTVPGRIQTTTK-SS 389 Caenorhabditis elegans
P91002       357 -------------------------pIQTATQ-SS 365 Caenorhabditis elegans
XP_003115495 377 --grQTTVNPGNPTVPGKTT----TKIETTTK-SS 404 Caenorhabditis remanei
EFP08818     362 ------------------------pgVQTTTK-SS 371 Caenorhabditis remanei
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap