6PPB


Conserved Protein Domain Family
Herpes_VP19C

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pfam03327: Herpes_VP19C 
Herpesvirus capsid shell protein VP19C
Statistics
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PSSM-Id: 397421
Aligned: 12 rows
Threshold Bit Score: 235.366
Threshold Setting Gi: 418280
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6PPB_5    64 PFRQ--------------------------------PTYGDFLVYSQTFSPQ-EPlgtflfs--fkqedngSSMDMLLTp 108
O36412    68 PYVQ--------------------------------PAFFDFLVHAKTISKH-EPvgvplfc--fknnstaPSIDVLFTp 112 Alcelaphine herpesv...
F5H8Y5    64 PFRQ--------------------------------PTYGDFLVYSQTFSPQ-EPlgtflfs--fkqedngSSMDMLLTp 108 Human herpesvirus 8...
Q01051    65 PFRQ--------------------------------PLYADFLIQAKTIHQK-EPigsflft--fkqedsgSSIDIIFSp 109 Herpesvirus saimiri...
Q66664    70 PYRQ--------------------------------PLYGEFLVHAKTFHPQ-EPrgtfvfafsvgdgpecTSVDTIFSp 116 Equid herpesvirus t...
ABB89231  84 gWRP--------------------------------PVFGDFLIHASSFNNA-EAtgtplfq--fkqsdpfSGVDAVFTp 128 Epstein-Barr virus
Q9WT35    17 avkkrkyisieagtlnnvvekerkflkqflsgrenlRIAARVFTPCELLAPElENlgmlm-------yrfeTDVD---Np 86  Human herpesvirus 6...
F5HA93    44 Q-----------------------------------ALTARFFVPEGLVEFE-AQpgall-------irmeTGCD---Sp 77  Human herpesvirus 5...
P32888   149 PGRQterlgeawgqlmeat--algsgraesgctragLVSFNFLVAACAASYD-AR----------------DAADAVRA- 208 Human alphaherpesvi...
Q9E6N1   154 AGRDprvmetvwyelsela--avsvnrvngsgvrpsLVSLSFLIAARASDYA-DK----------------CGAEALRA- 213 Marek's disease her...
P09276   161 aGRDpdvlleglrnlfnac--tapwtvgeggglrayVTSLSFIAACRAEEYT-DK----------------QAADANRT- 220 Human herpesvirus 3...
Q6UDJ3   159 VRNDlineletafmilnricglppvgtnginnfeasLVSLNVLAAAAAPHYR-NT----------------CEVDALRT- 220 Psittacid herpesvir...
6PPB_5   109 tslfmlsgmeaakapQTHkvagvwYGSg------SGLADFIPNLSELMDTG-EF-HTLLTPVGPMVQSVHSTFVTKVTSA 180
O36412   113 isfhaavglpadvdpNVH------RVAhiwygddSEVSSLMEDLNILLEES-NL-HTRLHPVGILVENNDSSFLNRVTAL 184 Alcelaphine herpesv...
F5H8Y5   109 tslfmlsgmeaakapQTH------KVAgvwygsgSGLADFIPNLSELMDTG-EF-HTLLTPVGPMVQSVHSTFVTKVTSA 180 Human herpesvirus 8...
Q01051   110 vsfykisgldaefapSVH------RISfvwygadNCIEDTVPNLAELIEEG-KF-HQFLTPVGPLVENITSTFVTRIKSV 181 Herpesvirus saimiri...
Q66664   117 vslfrvcglgadaapHTH------RIShiwyeseSDFLNVAANVRELIENC-SL-HKFLSPVGPLVQNIQSTFLNKITTV 188 Equid herpesvirus t...
ABB89231 129 lslfilmnhgrgvaaRVEagggltRMAnllydspATLADLVPDFGRLVADR-RF-HNFITPVGPLVENIKSTYLNKITTV 206 Epstein-Barr virus
Q9WT35    87 kilfvglfflcsnafNVSacvrtaLTT-------MYTNSMVDNVLSMINTC-KYlEDKVSLFG-VTSLVSCGSSCLLSCV 157 Human herpesvirus 6...
F5HA93    78 rhlyislyllgirasNVSastrclLES-------VYTASAARAALQWLDLGpHLlHRRLETLG-CVKTVSLGITSLLTCV 149 Human herpesvirus 5...
P32888   209 ---------------HVTanyrgtRVG-------ARLDRFSECLRAMVHTH-VFpHEVMRFFGGLVSWVTQDELASVTAV 265 Human alphaherpesvi...
Q9E6N1   214 ---------------HVIsnygrrRME-------EKLDRFGICLITMLRCR-VFpHRHFQLLGGLISWISQREIASITAV 270 Marek's disease her...
P09276   221 ---------------AIVsaygcsRME-------TRLIRFSECLRAMVQCH-VFpHRFISFFGSLLEYTIQDNLCNITAV 277 Human herpesvirus 3...
Q6UDJ3   221 ---------------FVLaggkdsKLN-------EKLTNLDLILQASVESR-NFpHSILFPAGALTESVNSTNVACVKML 277 Psittacid herpesvir...
6PPB_5   181 MKGVg---LARDEPRAHVGLTLPCDMLVDLDESC------------PMVQRREPAGLNVTIYASLVYLRVNQRPSMALTF 245
O36412   185 THGP----AYMSRKQAALKLVIPTDLFVDLDARLn-----------VEAYGAQPSGGTSTVFCTLVYTRCGNDIKPALTF 249 Alcelaphine herpesv...
F5H8Y5   181 MKGVg---LARDEPRAHVGLTLPCDMLVDLDESC------------PMVQRREPAGLNVTIYASLVYLRVNQRPSMALTF 245 Human herpesvirus 8...
Q01051   182 VKGEv---LNNKSPPENVKLLLPSDLFIDLDE--------------PNIDTLAPKHLLSFYYACVTYPVLHNVPVMALTF 244 Herpesvirus saimiri...
Q66664   189 VKGEv---LSNRSPPENIKLVLPSDLFFDMDETC------------PYPPSGDPVKPRVCYYVCILYVMVNNIPSASLQF 253 Equid herpesvirus t...
ABB89231 207 VHGPv---VSKAIPRSTVKVTVPQEAFVDLDAWLsggaggggggcfVGGLGLQPCPADARLYVALTYEEAG----PRFTF 279 Epstein-Barr virus
Q9WT35   158 MQGN----VYDANKENIHGLTVLKEIFLEPDWEPr-------------------QHSTQYVYVVHVYKEVLSKLQYGIYV 214 Human herpesvirus 6...
F5HA93   150 MRGY----LYNTLKTEVFALMIPKDMYLTWEET---------------------RGRLQYVYLIIVYDYDGPETRPGIYV 204 Human herpesvirus 5...
P32888   266 CAGPqeaaHTGHPGRPRSAVILPACAFVDLDAELgl-----------------gGPGAAFLYLVFTYRQRRDQELCCVYV 328 Human alphaherpesvi...
Q9E6N1   271 VRGPqesiKTEQTAMPRSSVYVPACAYIDFDKDIrv---------------iHEERSSSSLYLVFVYTQKFGRETVRIYV 335 Marek's disease her...
P09276   278 AKGPqeaaRTDKTSTRRVTANIPACVFWDVDKDLhl-----------------sADGLKHVFLVFVYTQRRQREGVRLHL 340 Human herpesvirus 3...
Q6UDJ3   278 MNGSv--eLEGGLTRPCGSFRFPACLFLDLDDTRqc---------gVVPRGADRADGLFYVYLLFLYSTETWHPSYEIYV 346 Psittacid herpesvir...
6PPB_5   246 FQSGKGFAE-VVAMIKDHFTDVIr---TKYIQLRHEL------------------------------------------- 278
O36412   250 FKSNKSDFD-VLTLIRAYYADLI----TNKLEVNQQC------------------------------------------- 281 Alcelaphine herpesv...
F5H8Y5   246 FQSGKGFAE-VVAMIKDHFTDVIr---TKYIQLRHEL------------------------------------------- 278 Human herpesvirus 8...
Q01051   245 IKSNKSIRD-LFCHLKVIYSDIIr---TKYIAMQNDF------------------------------------------- 277 Herpesvirus saimiri...
Q66664   254 FRTGKGASD-VVFFLRRYYSDAIa---NKITVLGDNL------------------------------------------- 286 Equid herpesvirus t...
ABB89231 280 FQSSRGHCQ-IMNILRIYYSPSI----MHRYAVVQPL------------------------------------------- 311 Epstein-Barr virus
Q9WT35   215 VLTSFQNEDlVVDILRQYFEKERflflNYLINSNTTL------------------------------------------- 251 Human herpesvirus 6...
F5HA93   205 LTSSIAHWQtLVDVARGKFARERcsfvNRRITRPRQI------------------------------------------- 241 Human herpesvirus 5...
P32888   329 IKSQLPPRG-LEPALERLFGRLRi---TNTIHGTEDMtppapnrnpdfplaglaanpqtprc----sagqvtnpqfadrl 400 Human alphaherpesvi...
Q9E6N1   336 MRSRLGEWA-FREGLGYMYSGVRs---NNAITGVDGLivphganvnmefpltktldlrnrdr-----rlgiaarsrdlnk 406 Marek's disease her...
P09276   341 ALSQLNEQC-FGRGIGFLLGRIRa---ENAAWGTEGVanthqpyntralplvqlsndptsprcsigeitgvnwnlarqrl 416 Human herpesvirus 3...
Q6UDJ3   347 AKSALGEAG-LQSMLDEKFARRRv---NNTVAAAPPAgnfyargrqredgdwrcyiedayrra--sgnnavnpleqgarp 420 Psittacid herpesvir...
6PPB_5   279 -----------YINRLVFGAVCTLG-TV-PFDSHPVHQSLNVKGTSLPVLVFANFEA-ACGPWTVF 330
O36412   282 -----------NINGLKFGVMCTVG-YT-DSSHSINQQSLCIRGSSLLVTSISNFFV-NYTGWRVF 333 Alcelaphine herpesvirus 1 strain ...
F5H8Y5   279 -----------YINRLVFGAVCTLG-TV-PFDSHPVHQSLNVKGTSLPVLVFANFEA-ACGPWTVF 330 Human herpesvirus 8 strain GK18
Q01051   278 -----------YINKMSFGALCKLG-SS-SSETVPRRGNYHFRGSSLPTVEVPDFVA-DPGPWMTI 329 Herpesvirus saimiri (strain 11)
Q66664   287 -----------DINNLTLGAVCMLG-YS-SSQSTPGRGNLHFRSYSLPTVEVSDFVA-QPGSWTLI 338 Equid herpesvirus type 2 strain 8...
ABB89231 312 -----------HIEELTFGAVACLG-TF-SATDGWRRSAFNYRGSSLPVVEIDSFYS-NVSDWEVI 363 Epstein-Barr virus
Q9WT35   252 ---------------SYFGSVQRIG-RC--ATEDIKSGFLQYRGITLPVIKLENIFV-DLSEKKVF 298 Human herpesvirus 6 strain Z29
F5HA93   242 --------------PLCTGVIQKLG-WC--LADDIHTSFLVHKELKLSVVRLDNFSV-ELGDFREF 289 Human herpesvirus 5 strain Merlin
P32888   401 yrwqpdlrgrpTARTCTYAAFAELG-MMpEDSPRCLHRTERFGAVSVPVVILEGVVW-RPGEWRAC 464 Human alphaherpesvirus 1 strain 17
Q9E6N1   407 adwkvdlrgrpTKESCMYAAYCRLG-HL-DESSVPVKKFERCGSLDIPVIWIPGVIW-NIGTWIEC 469 Marek's disease herpesvirus type ...
P09276   417 yqwtgdfrglpTQLSCMYAAYTLIG-TIpSESVRYTRRMERFGGYNVPTIWLEGVVWgGTNTWNEC 481 Human herpesvirus 3 strain Dumas
Q6UDJ3   421 tdlhisfagvpDRNSATYAAFCQLGvSLgPWSSACRYTTVQRHGLGLKYVELPGLSL-KIGTWRAC 485 Psittacid herpesvirus 1 Amazon pa...
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