Conserved Protein Domain Family
Rhabdo_ncap_2

?
pfam03216: Rhabdo_ncap_2 
Rhabdovirus nucleoprotein
Statistics
?
PSSM-Id: 397361
Aligned: 13 rows
Threshold Bit Score: 187.372
Threshold Setting Gi: 914567579
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
CDW56252      54 YKEVEVQQIP-----------FISDAS----IAVAYFIRQSLCLICnekvstdackfpvvlgfqcfelddadkrrqmfd- 117 human whipworm
Q82680        15 IKGGVLEDPEteyrpstitlpLFFSKT----DLDLEMIKRAVSQVG---------------------------------- 56  Infectious hema...
KOB71795       7 FFNEMLKEEEikktk--lptaLKIQKH----KLLCALGKAQPSPTEeedekfvkemddntfgffmnflksyrslhwsdti 80  winter moth
VDO09425      72 FPPALEDPELe---------lLQLSGP----ILFIAATHSIHLPITyaqltdvilvhfcnlvgyspgeyvagkkmltaky 138 Haemonchus placei
KGN63419      72 AADTSVKPQA---------------------------------------------------------------------- 81  cucumber
XP_017426734  71 FPDDKLRGQKai--------rLIPLED----SQVCRLGKELFQLIN---------------------------------- 104 adzuki bean
KOM30981      73 FPDDKLRGKKai--------rLIPLED----NQVCRL------------------------------------------- 97  adzuki bean
KZM92147      82 WTDLQPGARRcy--------nLLKIGEv---EELLALGLQVFSSIQ---------------------------------- 116 Daucus carota s...
XP_012834941  75 WKDLQPGQKPvi--------kLHRLTV----DQICELGVEVFRGLK---------------------------------- 108 spotted monkey ...
Q6E0X1        66 WTNLATALTN---------------------------------------------------------------------- 75  Maize mosaic vi...
Q86134        62 WSDADIKSIPiy--------dVHQVPA----AQVIALGKDLLTQIQn--------------------------------- 96  Lettuce necroti...
CDY38179      43 WTNEMLKDRKvi--------nLDAWNQvgtfDERIQIIREALTSLT---------------------------------- 80  rape
Q91QN9        28 WDDESTIAMPsy--------kLSVLSD----ADAVREVKIFLTGLF---------------------------------- 61  Lettuce big-vei...
CDW56252     118 -------lqfsghkkvdndsfiryismelqsiegrasifkRFASDEYAKTFCDLVEEAVKATPDYGkglldltev----- 185 human whipworm
Q82680        57 ----------------------------------------GEGTRKALSLLCAFVIAETVPSEAGT-------------- 82  Infectious hema...
KOB71795      81 ------ainsvklileehqhfdislyidcakaiyltysgkVQHTGAVYGAFTYVLTHARLFGDPAQsmfqlesngsfkie 154 winter moth
VDO09425     139 ktphvtnfteytwpgyrefrskiradfmaklksrnytcfdDLFAIYSTSNIADVVNDADKPGPSSMpdv----------- 207 Haemonchus placei
KGN63419      82 ----------------------------------------SQKAPQVAPAVINPVPAPIAAQPATVgni----------- 110 cucumber
XP_017426734 105 -----------------------------------------SISQYHLGSIFILAFQLKTPGDGRTerm----------- 132 adzuki bean
KOM30981         --------------------------------------------------------------------------------     adzuki bean
KZM92147     117 ----------------------------------------GNITAQAICQLMNLAYNLKDSTGeyc-------------- 142 Daucus carota s...
XP_012834941 109 ----------------------------------------TGVSHKTVGGLMLLAFNLTDKFDlplfad----------- 137 spotted monkey ...
Q6E0X1        76 ----------------------------------------GTFSATHLRTLCELAFNLKAPTGTGTifiheiadpwk--- 112 Maize mosaic vi...
Q86134        97 ----------------------------------------NSVNTVTVDYCLVLAVSIPKPAMTSFehlltppspeqgtr 136 Lettuce necroti...
CDY38179      81 ----------------------------------------TEVSVRSVGALMVCAWGLVSCENPNEsvf----------- 109 rape
Q91QN9        62 ----------------------------------------VRSSPRAIAAALIMTWNMRSVDPVAVrif----------- 90  Lettuce big-vei...
CDW56252     186 --------drdksfaaQLMALEANVFGIRLLPTPRRNdwafsca--------------------ddvlrnQVLDFLDFAS 237 human whipworm
Q82680        83 ----------------VAELLEALGFVLESLDTGAPPda------------------------------tFADPNNKLAE 116 Infectious hema...
KOB71795     155 fgdiskqlpdstymrkITGLIEDLRIGYNEMKFRILN------------------------------------------- 191 winter moth
VDO09425     208 -------------rpsVRDAQDSSFLHESQIRKIGDT------------------------------------ERTLIER 238 Haemonchus placei
KGN63419     111 -------------iprIVGPLEADVIGIRGMQLVHREelpdvgylhpgfirelewsdgilremggrlsilPDADLKEHAE 177 cucumber
XP_017426734 133 -------------fpaFDELEIPEDVDYFSLNRSGML------------------------------------YDGYATT 163 adzuki bean
KOM30981         --------------------------------------------------------------------------------     adzuki bean
KZM92147     143 -------------fgdVSPELILEDTDFDEVSNAALLiv------------------------------rPYNTLTVMIS 179 Daucus carota s...
XP_012834941 138 -----------pkfelVDKSKEMDIIELSATPINNLT---------------------------------TSSASMNFGE 173 spotted monkey ...
Q6E0X1       113 ------gcidanapdtVAIPATDSDVNMSTVSSGSTA------------------------------------------- 143 Maize mosaic vi...
Q86134       137 ldftqpqagvsnrsglTAIEKMTLNATRKNLLTETDEekrarye--------------------aiikkmEDQEAGLGTS 196 Lettuce necroti...
CDY38179     110 -------------gglWESSKARELEEYTRLSDGILCkss---------------------------rwrSPPDDKDLIL 149 rape
Q91QN9        91 --------------paKDKGKDTADVDVKNLEVPGVD-----------------------------------YIDAMVET 121 Lettuce big-vei...
CDW56252     238 SLCKQPPNEAAKFVCMLSALLFRLL------AKSPEAVERAMknfs--nvfVLVTKTACTIKSYSLPLKtikSLLDTREL 309 human whipworm
Q82680       117 TIVKENVLEVVTGLLFTCALLTKYD------VDKMATYCQNK---------LERLATSQGIGELVNFNAnrgVLAKIGAV 181 Infectious hema...
KOB71795     192 -----------ANVTYLTLLILRRF------VKNETQFFDMFkrvnthddyVKLCPHPLDS-----------QLPRITQE 243 winter moth
VDO09425     239 IQDMYAAGQLPTIGVALSYLLVRLV------AKSTDHVINKGkefg--vspNK-YGLNMNPALTFEFNPk--AIETIRTN 307 Haemonchus placei
KGN63419     178 RLWRGLTVQCTNRVTGIAMLYISLEppftikSAGNRSWEKAYagdl-kenyLKIYKEQFPIDAPVLSKA---CIDGFVWA 253 cucumber
XP_017426734 164 IHESGEIYENAMAYSFLACSILKFF------VRSVENYSNSLrhiq--sgfRKFYARDFPLGAINIRRE---TISRIHDL 232 adzuki bean
KOM30981         --------------------------------------------------------------------------------     adzuki bean
KZM92147     180 HEEPEYKERVANGFCYLATSYMRLY------TKSAENYLRIEgplr--nrfKDFYDYALPFENFHPVPE---AVNCIKFQ 248 Daucus carota s...
XP_012834941 174 RFTDYQKGRFAKSCCFIACSYLRLY------SKPVDNYLRIGhllr--nsfAKFYGFQLALQNFHPEKE---GIQAVKTV 242 spotted monkey ...
Q6E0X1       144 -SGTEDAEVKMKAISFLCCTLLRLS------VKEPSHIMQAInsir--qrfGSLYGVSSPTLNSVTFNRs--QLSRIKQG 212 Maize mosaic vi...
Q86134       197 KATVVTSETEAAAYGFLAATLLKLY------AKSTESYVAGLaqir--nrfAAWYDCPKAVLDAFQPTEa--ALVSLRAA 266 Lettuce necroti...
CDY38179     150 FTTTGNGLNWVRTACFYCAAVLRLA------TKEHDALVKAWsylp--ehyQSFYKAPLEFSLSLDHE----CLKCLRRL 217 rape
Q91QN9       122 NVKDASDIEIIRAGAFIAASTLKMF------AKSFTGWTQAWehkhiqkryADFCKTEYPFKEFTTNNK---CAETMYEA 192 Lettuce big-vei...
CDW56252     310 ISNRLVALV---AGLEILSQSDNSHdm-----nLLKRSRKYCYLDDLKYHGMKALRLAFQAASVLKISVDELFDLLlemi 381 human whipworm
Q82680       182 LRPGQKLTK---AIYGIILINLSDP--------AIAARAKALCAMRLSGTGMTMVGLFNQAAKNLGALPADLLEDL---- 246 Infectious hema...
KOB71795     244 FNKNLSVRSlcpAVYLAIHAFLNGNd------tKTNRILRATCIQYIEWTGLQLPYLFFKVVDLYAVEESNLWESL---- 313 winter moth
VDO09425     308 MTAYSSTVA---TYLQSLVEFINTNqdgsltpnNCKIQIKAMIEIRLAFYGMVIPALGLSVADKLRISGEHLAYIS---- 380 Haemonchus placei
KGN63419     254 FQNVSILKG---TLGR--------------------------------------------VASSLNLSPKDLTKAC---- 282 cucumber
XP_017426734 233 FSDSVLLQN---TLYRFLYNANHRG--------MVCDVQSFIYDTHLTYTGMHVVPIAFKLCEAFQCSSVQFLALI---- 297 adzuki bean
KOM30981      98 --------------------------------------------------------------------------VI---- 99  adzuki bean
KZM92147     249 IDANQTLRN---TFYNLVYAGESVE--------NGKQLKEFLYGYHILYTGMHCFPLFLKCVEAMKVTNNQLINVL---- 313 Daucus carota s...
XP_012834941 243 MDLQSVIKN---TFYVLLYAGEEEK--------NGREIKDFLYVMHVAYIGLHPYTLFLKCVEDLKTSDVIFMQAI---- 307 spotted monkey ...
Q6E0X1       213 IETYPSARG---TVFYYTRYADATHgy----ttKEYGICRFLLFQHLELEGMHIYKMLLALLGEWSTVPIGLLLTWi--- 282 Maize mosaic vi...
Q86134       267 FARRPEVLS---TWTLWVAVNENRTpgl---lvTQQGLLNYLACQQFAYPGMHAYTLLIEIHEHTGMKFSDLLVEM---- 336 Lettuce necroti...
CDY38179     218 LQKSTTIRN---SVAPFLLAFQELSgc-----sKNRAICKTLFESHLGFTGLHAYTLFISNASKLAVPHHVFRHVL---- 285 rape
Q91QN9       193 YQGQKLYQG---TLGRILYALGDV---------ADPRQTEMLFDQHLANTGMHIIPQFTNAQLSIGATTAGLLSAL---- 256 Lettuce big-vei...
CDW56252     382 tierakgRIRSIRHSVHLLKLLLRDFSNFDACDS------------------WMYGRVFDDKNFLHLTNKYHDRFIFFCC 443 human whipworm
Q82680       247 -------CMKSVVESARRIVRLMRIVAEAPGVAAky---------------gVMMSRMLGEGYFKAYGINENARITCILM 304 Infectious hema...
KOB71795     314 ----------QYESTYQSLFKLANDYYKQYKNSKadppe---------tvawFPYCRALDGDYHADLSGPQNKDLCMILA 374 winter moth
VDO09425     381 -------YSNLTQDGCNVFLDFLSRL--SSQNEQyridrglasagvidpngpFRFCRLFNQQYMMKLSGIKHIHTSYLWM 451 Haemonchus placei
KGN63419     283 -------WHKLTKMPLNSLVTILSKVTAESNIAGapnv-----------rgtWKYARVFGSEYFIGIQSKRCPILFCLLA 344 cucumber
XP_017426734 298 -------YAKIFEHQIRALETAF--LLLDSKEESyrr-------------qmWKYARIFDHTFLLPLQTKRCPKFAFILA 355 adzuki bean
KOM30981     100 -------YSELIEPQIDALETAF--LLHESKDGRyrr-------------qmWKYANLFDITFLKPIQTKSCSRFVFILA 157 adzuki bean
KZM92147     314 -------RSNYFKVELNALESIFNNLYGSSEQPGmer-------------qmWKYARVFNSRFFNQLQTKNCATFTAVLA 373 Daucus carota s...
XP_012834941 308 -------YSGRMKRDVESLLHVFENLSGKIEDEEyrl-------------qmWKYGRIFDSRFLSVLQTKKCVYFTWVLV 367 spotted monkey ...
Q6E0X1       283 -------RNPRSKLAINEIVKIVKELDKPEVDKG------------------WKYARMVNNTFFLDLSSRRNTYLCAVLA 337 Maize mosaic vi...
Q86134       337 -------DCPATRAGVREALELIRDYEITKDHPKrt--------------tyFRYARNWDPKYFGALQSTECKTLVYVAA 395 Lettuce necroti...
CDY38179     286 -------RHHAAEEGLETIMEILKRYEDPSLDEGdrks-----------kctWIYSRIFDSDMFGSLQTKRCVFLAALLA 347 rape
Q91QN9       257 -------NYGQNFGTLMQLKKLINESLSKPPGPDnr--------------atWRFARIFDPSVFQTLQTKYCADTVAILA 315 Lettuce big-vei...
CDW56252     444 YV 445 human whipworm
Q82680       305 NI 306 Infectious hematopoietic necrosis virus - WRAC
KOB71795     375 YL 376 winter moth
VDO09425     452 YI 453 Haemonchus placei
KGN63419     345 MI 346 cucumber
XP_017426734 356 CI 357 adzuki bean
KOM30981     158 CI 159 adzuki bean
KZM92147     374 HL 375 Daucus carota subsp. sativus
XP_012834941 368 YV 369 spotted monkey flower
Q6E0X1       338 SL 339 Maize mosaic virus maize/USA/Reed/2005
Q86134       396 SV 397 Lettuce necrotic yellows virus isolate 318
CDY38179     348 VI 349 rape
Q91QN9       316 NI 317 Lettuce big-vein associated virus isolate Kagawa
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap