Conserved Protein Domain Family
LOB

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pfam03195: LOB 
Lateral organ boundaries (LOB) domain
The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.
Statistics
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PSSM-Id: 427193
Aligned: 147 rows
Threshold Bit Score: 106.425
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WGS:AAAA:OsI_03908  38 PCGACKFLRRRCVPGCVFAPHF-----SGcggsgvgagvggrgreRGAAEFAAVHRVFGASNVAKLLSRV-PAALRRDAA 111 long-grai...
XP_009405108         2 SCNGCRVLRKGCSRACVLRPCLrwidtAE----------------AQGHATAFVARFFGRAAFMSLLSAVp-DSQRPALF 64  wild Mala...
XP_003562786        12 SCNGCRVLRKGCNEACVLRPCLhwieaAE----------------SQGHATVFVAKFFGRAGLLSFLTAVp-EPQRPAVF 74  stiff brome
EMS63953             2 SCNGCRVLRKGCSDACVLRPSIewidgAQ----------------PQANATVFVAKFFGRAGLVASLAAVp-LHHRPALF 64  Triticum ...
XP_009397285         2 SCNGCRVLRRGCSATCILRPCIqcidgAG----------------AQAHATAFVAKFFGRSTLLSFLSSVp-LPRRPAAF 64  wild Mala...
XP_006346321         2 SCNGCRILRKGCNENCILRQSLqgiesPH----------------AQANATVFVAKFFGRAGLMSFLTSVs-ESQRPALF 64  potato
XP_002527499         2 SCNGCRILRKGCSEDCMLRHCLqfidnPQ----------------AQANATVFVAKFFGRAGLMSFISSVp-YNQRPSLF 64  castor bean
XP_003535688         2 SCNGCRVLRKGCSDDCMLRHCLlwienPQ----------------AQAHATLFVTKFFGRATLMSFLSTVp-PNQRSALF 64  soybean
XP_006341223         9 KCAPCKYQNNICDENCPLAPFF-----PS----------------NKVDEFDKVIRLYSIDTLINMLNSVtANEKKAKMA 67  potato
XP_002875413         5 PCRFCRLQNKQCVNDCMFSPLF-----PS----------------NNLRKFTIMNFVFGHKTLTFFLKDL-SPMDRKYTT 62  Arabidops...
WGS:AAAA:OsI_03908 112 RTVCYEAQARIADPVYGSVGTILALQHQVSLLQGQLSVLES 152 long-grained rice
XP_009405108        65 QSLLFEACGRTINPVGGAVGLLCTGNWHLCQAAVNAVLNgd 105 wild Malaysian banana
XP_003562786        75 QSLLYEAAGRTINPVSGAVGLLWSGSWQLCEAAVQTVLRgg 115 stiff brome
EMS63953            65 RSLLYEACGRTINPVSGAIGLMWTSNWDLCQAAAEAVLRGD 105 Triticum urartu
XP_009397285        65 RSLLYEACGRTINPVTGATGLLWTGNWHLCQAAVATvlggg 105 wild Malaysian banana
XP_006346321        65 QSLLFEACGRTVNPVHGAVGLLWTGNWHVCQSAVETVLKgg 105 potato
XP_002527499        65 QSLLYEAVGRAVNPVSGAVGLLWTGNWHVCQKAVMTvlrgg 105 castor bean
XP_003535688        65 ESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLrgg 105 soybean
XP_006341223        68 ETLILEAKIRYENPVYGSLAVIEKLNLEIEETQKELDLVQK 108 potato
XP_002875413        63 RTLYFEAKSWFFGPSKDPSDFLNAVINYANQTLAELSKTKK 103 Arabidopsis lyrata subsp. lyrata
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