5IY6


Conserved Protein Domain Family
TFIIA_gamma_C

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pfam02751: TFIIA_gamma_C 
Transcription initiation factor IIA, gamma subunit
Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The C-terminal domain of the gamma subunit is a 12 stranded beta-barrel.
Statistics
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PSSM-Id: 397049
Aligned: 95 rows
Threshold Bit Score: 54.0787
Threshold Setting Gi: 74621310
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IY6_O            59 R-GSLNTYRFCDNVWTFVLNDVEFR-E----VTELIKVDKVKIVACDG 100
jgi:OSTLU_119620  58 K-GQLHTYRFCGNVWTFIVENAIVNiAdvdvQSKEVRVQLLKVVACDS 104 Ostreococcus lucimarinus CCE9901
B7Q1Q9            59 KaGHLSTYRFCDNVWTFVLKDVEFReV-----QELVKADKVKIVACDG 101 black-legged tick
EFX87528          59 KaGKLNTYRFCDNVWTFLLSDVEFRdV-----SELCKGETVKIVACDG 101 common water flea
BAH70884          59 KaGKMDTYRFCDNVWTFMLSDVEFKeT-----QEMAKVEKLKIVACDG 101 pea aphid
XP_001639848      59 K-GHLNTYRFCDNVWTFVLENVDFRdV-----GDVVKVDKVKVVACDG 100 starlet sea anemone
EDV28948          59 K-GHLRTYRFCDSVWTLIVENAEFReTg--sDTHSFKVDKLKVVACDG 103 Trichoplax adhaerens
EDW43770          59 TaGRLHTFRFCDNVWTLILKDAEFReD-----QHSMKVDVVKVVACLG 101 Drosophila sechellia
XP_002507208      59 K-GDLETYRFCDNVWTFMLKNVTFDvSgpggDKRAASVDRLKIVACDG 105 Micromonas commoda
EEH59891          59 K-GNLGTYRFCDNVWTFILSDVTFStSgaggEIATATLDKLKIVACDG 105 Micromonas pusilla CCMP1545
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