Conserved Protein Domain Family
RmuC

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pfam02646: RmuC 
RmuC family
This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Statistics
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PSSM-Id: 396974
Aligned: 311 rows
Threshold Bit Score: 132.993
Threshold Setting Gi: 81532912
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015692059          116 EQLQQLLQPLGQQLRRFEQDlVQMH-QQSQQKQAQLDEQLRQLFSLNQTIGQeakeLSQALKgNLKLQGNWGEQILERLF 194 Sapros...
Q2RP03                 96 ERITDLTRRVGEGLQRSTEK-TAESmQDLRARLATIDAAQKNIAEMSEKMTS----LQDILS-NKQARGAMGQTQMEDLV 169 Rhodos...
Q6NC52                 97 ERLDSVTHRFGQSLTQSTRY-TMQSlQALHERLGIIDRAHDNLTELTDQVTT----LRDVLA-NKQARGAFGQARMETIV 170 Rhodop...
Q21B63                 96 ERLDSVTHRVGQSMEHTTRH-TLNSlRVLHERLGIIDDAHHNLTELTAQVTT----LRDVLS-NKQSRGAFGQARMEAIV 169 Rhodop...
EGP09827              112 ERLDSVTHRVGQSMEQTTRN-TMDSlRALHERLGIIDNAHKNLTDLTSQVTT----LRDVLA-NKQSRGAFGQARMEAIV 185 Bradyr...
TriplettUF:B488_13330  82 QHLEGLSQRVGSTLVEQTKT-TNENlRRLQERLAIIDVAQNNIQNLAKDIVS----LQTILS-NKQTRGAFGQSRMENII 155 Liberi...
Q92SH7                 90 QRIDGMTHRIGASISEQTKA-THENlRRLQERLAVIDNAQNNIQSLAKDMAG----LQSILA-NKQTRGAFGQSRMEAIV 163 Sinorh...
Q2YJQ1                102 ERLDGMTHRIGQTMTEQTRS-THENlAKLQERLAVIDTAQNNIQSLAGQVVQ----LQAILA-NKQTRGAFGQSRMEAII 175 Brucel...
Q11LA3                103 ERLDGMTSRLGQSITEQTKS-THENlAKLQERLAVIDTAQNNIQSLAGQVVQ----LQQILS-NKQTRGAFGQSRMEAIV 176 Chelat...
jgi:Lebu_1859         170 NRLDLMNMKVEERLSKGFEE-TTKTfGNVLERLGKIDEAQKKIETLSSNVVS----LQDILT-DKKSRGIFGEVQLYQIL 243 Leptot...
WP_015692059          195 EASGLSKRYM-IKTQAHFVTPdgRkrQPDFIVQLPQN-RQLIVDSKVSLRAYLRYMQaEEG---SA-AAAKAKKEHLQAI 268 Sapros...
Q2RP03                170 RDLLPPSA---YRFQAKMGNG--R--IADCLLTLPNPpGAIAIDAKYPLESYRALRA-AGS----DaERLQAGRAFAADV 237 Rhodos...
Q6NC52                171 QDGLPKGS---FAFQYTLSTG--K--RPDCVVLMPNQ-PPLCIDAKFPLEAVTALRE-ATT----EeAKKAASQRLRTDV 237 Rhodop...
Q21B63                170 ADGMPKGA---YAFQYTLSSG--K--RPDCVVFLPDQ-RPLCIDAKFPLEAITALHD-ARS----EeARRAASQRLRNDV 236 Rhodop...
EGP09827              186 QDGMPKDS---YAFQHTLSNR--T--RPDCVIFLPDQ-RPLCVDAKFPLEAFTALRD-ART----DeEKKAATQRLRQDV 252 Bradyr...
TriplettUF:B488_13330 156 IDALPIGT---YTFQPTLSNG--S--RPDCTVKMPNNaPTLVIDAKFPLEAWNAMRE-TGE--------NISKTKFRRDI 219 Liberi...
Q92SH7                164 ADGLPMGA---FAFQATLSNG--A--RPDCTIRMPNGqPPLVIDAKFPLEAWNSMRD-AAS----AeRRQQAAQAFRRDM 231 Sinorh...
Q2YJQ1                176 ADGLPQGA---YEFQATLSNS--T--RPDCLVRMPNNaPSLVIDAKFPLEAWNAMRE-TEQ----PeARKAAVAQFRRDM 243 Brucel...
Q11LA3                177 ADGLPQGA---YEFQATLSNG--S--RPDCLVRMPNGaPSLVIDAKFPLEAWNAIRA-AAEgegGPeARRFAESAFRRDV 248 Chelat...
jgi:Lebu_1859         244 SSVFGEKNDKlYQKQYKLSNG--T--IADSIIFTPEPlGNIAIDSKFPLENYRRMYS-SEL---SQpERENAKKDFSNDL 315 Leptot...
WP_015692059          269 KQHIKGLSEKkyellpqlnsldY---------VLLFIPVEPAFLLALEEEEELFFDALQQNIVLVSPSSLLVSLRTIAQL 339 Sapros...
Q2RP03                238 LRHVRDIAER------------YiiadetaesALMFLPAEAVYAELHANYPQVVEQAFRRRVWIVSPTTLMATLNTVRAI 305 Rhodos...
Q6NC52                238 MRHVDDIASK------------YlipgetqdtALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQVMQQI 305 Rhodop...
Q21B63                237 LRHVTDIAEK------------YlipgetqdtALMFVPSESVYAEIHERFDDVIQKAYRARIVLVSPSLLMLAIQLMQQI 304 Rhodop...
EGP09827              253 MKHVNDIADK------------YlipgetqdtALMFVPSESVYAEIHDGFDDVIQKAYRARIVLVSPSLLMLAIQVMQQI 320 Bradyr...
TriplettUF:B488_13330 220 ETHIRDISKK------------YlipgetqdiAFMFVPSESIFAEIHENFEKLIQTAYRARVIIVSPSILMLSIQVIQIL 287 Liberi...
Q92SH7                232 EVHIRDIAGK------------YllpgetqdtAFLFVPSESIFAEIHEHFEAVVQKAHRQRIVIVSPSLLLLSIQVIQAI 299 Sinorh...
Q2YJQ1                244 EIHIKDVSDK------------YlipgetqdtAFLFVPSESIFADIHEHFEALIQRAHRARVVVVSPSLLMLSIQVIQAI 311 Brucel...
Q11LA3                249 EVHVKAIAEK------------YllpgetqdtAFMFVPSESIFAEIHENFEALVQRAHRARVVIVSPSLLMLSIQVIQAV 316 Chelat...
jgi:Lebu_1859         316 KKHIDTISSK------------YiiknetseqAILFLPAEAIFAEINAYHTDIIEYAYKKNVRIASPTTLISVLTVIQVM 383 Leptot...
WP_015692059          340 WRQEQQNENAQQIARQGGRLYDRFVLWVEKIESLGKQIKTVQNNYDKiLYDLRdqrNSLINESDKLRSLGS 410 Saprospira grandis
Q2RP03                306 LKDARMNDMAVLIRREVRALIDDVNRLDDRVGKLARHFGQTGEDLRQ-IQIST---EKIMRRGDRIEEVQF 372 Rhodospirillum ...
Q6NC52                306 LKDARMRDAADQIRTEVLSLGDDLARLRERVTKLQTHFGQVTDDVRQ-ILISA---DKIERRAARIEELDF 372 Rhodopseudomona...
Q21B63                305 LKDARMRDAADQIRTEVMNLGDDLSRLRDRVLKLQTHFGQVNEDVRQ-ILISA---DKIERRAGRIEELDF 371 Rhodopseudomona...
EGP09827              321 LKDARMRDAADLIRTEVMHMSDDLGRLRERVLKLQKDFGNVNEDVRQ-ILISA---DKIEKRAGRIEELDF 387 Bradyrhizobiace...
TriplettUF:B488_13330 288 LRDYRMREQASLIQIEVTNLIEDILLMDKQTHKLQEHFVHLQKDISL-ILTSS---EKLIKRASKIESIEL 354 Liberibacter cr...
Q92SH7                300 LKDARMREQAHLIQSEVVRLMEDLSRLDERVRKLQGHFAMTQKDVED-ILISS---DKLTRRGAKIEALEL 366 Sinorhizobium m...
Q2YJQ1                312 LKDARMREQAHVIQGEVIRLMEDVGRLDERVRKLQTHFIQANKDIDD-ILVSS---SKVTKRGAKIEALEF 378 Brucella abortu...
Q11LA3                317 LKDARMREQAHLIQAEVVKLMQDVSRLDDRVRKLQGHFLQANKDVDL-ILTST---DKVVKRGAKIEALEL 383 Chelativorans s...
jgi:Lebu_1859         384 MINLERNKYANIIQQELEKLNLEFTRYRTRWDNLQKNIEKVSKDVKE-INTTS---NKISKRFTEISNVKF 450 Leptotrichia bu...
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