1J8B


Conserved Protein Domain Family
YbaB_DNA_bd

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pfam02575: YbaB_DNA_bd 
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YbaB/EbfC DNA-binding family
This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.
Statistics
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PSSM-Id: 396913
Aligned: 685 rows
Threshold Bit Score: 33.2042
Threshold Setting Gi: 229565457
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1J8B_A          15 KQAQQXQEkxqKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXedDKEXLEDLIAAAFNDAVRRAEELQKEK 94  Haemophilus i...
WP_013326105    10 KMLEGMQEnaaKLQEELASKTFSVKSGGGLIELTLNGNGEVIDLSIDDELLe-DKEALQILLIGAINDANKMVQQNQQSS 88  Sulfurimonas ...
Q30TR5          10 KMLESMQEsakKLQSELESKVFNVKSGGGLVEITINGSGEVTDITIDNSLLg-DKESLEILLIGAINDANKMVEQNRQNS 88  Sulfurimonas ...
WP_013023314     9 dllGNMQKsvgDLQEKAKSNVFTAKSGGGLVSVSINGAGELIDLSIDDSLLe-DKESLQILLMSALNDAYRNVEENKKNL 87  Helicobacter ...
WP_013553106    12 KMMEQLQEkakELQEKSKETILTAKGGGGMVQVSANGAGEIVDITIDDSLLe-DKESLQILLISTINDVLKMVEDNKKSQ 90  Nitratifracto...
A6QCK9          12 KMMEQMQEkakELQEQAKNVEFTAKAGGGLIEVTANGAGEVIDMNIDDSLLe-DKESLQILLISAMNDVNKMIEDNKKSQ 90  Sulfurovum sp...
A7HZW7          12 emLGDLQKkaqQMENENANREFSVKSGAGMVEIKISGKGEVLDVSIDDSLMs-DKDSLQILLISAINDAVKLIDNEKKNL 90  Campylobacter...
Q9PM34           8 elLNQVQEkakNIELELANREFSAKSGAGLVKVSANGKGEIIDVSIDDSLLe-DKESLQILLISAINDVLAMVAQNRSSM 86  Campylobacter...
jgi:Arnit_0695  14 diMGQVQNmseKAKEDNASKIFTSKAGGGMVELSINGNSEVIDLQIDDSLLe-DKDSLQILLISAMNDVIKQSDENKKMM 92  Arcobacter ni...
A8ERY0          14 dMLNQFQDmakNAQNENASRIFTSKAGGGMVEISINGNSEVVDLKIDDSLLe-DKDSLQILLISCMNDVIKQSDENKKMM 92  Arcobacter bu...
1J8B_A          95 XASVTAGXP 103 Haemophilus influenzae Rd KW20
WP_013326105    89 AMSMLGGLk 97  Sulfurimonas autotrophica
Q30TR5          89 ALGMFGNVn 97  Sulfurimonas denitrificans DSM 1251
WP_013023314    88 ALDLFGGMK 96  Helicobacter mustelae
WP_013553106    91 AMGMFGGLN 99  Nitratifractor salsuginis
A6QCK9          91 AMGMMGGMN 99  Sulfurovum sp. NBC37-1
A7HZW7          91 AAKMLGDIG 99  Campylobacter hominis ATCC BAA-381
Q9PM34          87 ANDVLGGFG 95  Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
jgi:Arnit_0695  93 AMNMMSGMG 101 Arcobacter nitrofigilis DSM 7299
A8ERY0          93 AMNLMGGLG 101 Arcobacter butzleri RM4018
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