3SZL,3DNF


Conserved Protein Domain Family
LYTB

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pfam02401: LYTB 
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LytB protein
The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Statistics
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PSSM-Id: 426756
Aligned: 618 rows
Threshold Bit Score: 220.347
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3SZL_B                19 NPRGFCAGVDRAISIVENALAIYGAp---IYVRHEVVHNRYVVDSL-RERGAIFI--EQISEvPD------------G-- 78  Escheri...
jgi:Trad_1220         15 KPRGFCAGVVMAIQAVEEAAAERRAhgegLAVYHAIVHNNTVVERLeAEHGVHFV--EDLAElAPlrekaaaagrplS-- 90  Trueper...
WP_013614360           9 KPRGFCAGVVMAIQAVEQAADHERQp---VTVYHSIVHNHTVVDRLeRGKGVSFV--EDLQEiPLlp--------hsT-- 73  Deinoco...
WP_015236935           9 KPRGFCAGVVMAIKAVEKAAQSEDRp---VTVYHSIVHNHTVVERLeQRHGVHFV--EDLESiEAlp--------qaS-- 73  Deinoco...
WP_014685178           9 KPRGFCAGVVMAIQAVERAAAQEDRp---VTVYHSIVHNHTVVERLrEGGNVHFV--EDLDTvDAlp--------dkG-- 73  Deinoco...
WP_015798759          10 APRGFCAGVERAIGALGWMLRIFEPp---VYCYHEIVHNRLVVEAF-EAAGVVFV--DDVESvPP------------G-- 69  Acidimi...
jgi:Sros_3716        123 GTRPACPGARRALEITRDTAGGGQA----VFSYGPVTDDPHQAGAL-TREGVTTVtdLD------------------Rlp 179 Strepto...
instpast:LEPBI_I1588   9 NPRGFCAGVKYAISYVEQAFQENPDt--pLYVRKEIVHNQRVVEEM-KKKGIRFI--SELSEvPD------------G-- 69  Leptosp...
Q8F3I3                 9 NPRGFCAGVKYAISYVEQV-QANSEe--qIYVRKEIVHNRRVVEDM-KKNGIRFI--NDLDEaPN------------G-- 68  Leptosp...
tigr:RIEPE_0555        7 NPRGFCAGVRRSIDCVNFAMNFHKp----VYVKHEIVHNTHVVEGF-RKKGINFI--EKISDvPD------------G-- 65  Candida...
3SZL_B                79 --AILIFSAHGVSQAVRNEAKSRDLT-VFDATCPLVTKVHMEVARASRRGEESILIG-HAGHPEVEGTMGQYS-NPeg-g 152 Escheri...
jgi:Trad_1220         91 --ETVVFSAHGVSPAVRQGARELGLA-TIDATCPLVTKVHSEAKKYAREGFHILLIGdSSRHQEVIGTKGEAP-EV---- 162 Trueper...
WP_013614360          74 --DTVVFSAHGVSPAIREQARTLGLA-TVDATCPLVTKVHTEAKKYAAEGYTILLIGdSARHQEVIGTQGEAP-EQ---- 145 Deinoco...
WP_015236935          74 --DTVVFSAHGVSPRVRARARELGLA-TIDATCPLVTKVHSEAKKYAREGYTILLIGdSASHQEVLGTRGEAP-DA---- 145 Deinoco...
WP_014685178          74 --ETVIFSAHGISPAVRERARALGLA-TIDATCPLVTKVHTEAKKYAREGYTILLIGdSARHQEVIGTRGEAP-EH---- 145 Deinoco...
WP_015798759          70 --RPVMLSAHGTAPEVLEAARQRCPI-VVDAVCPLVTKVHHEIRTRAQRGYQIVYVG-HRGHEEAIGATAEAP-EA---- 140 Acidimi...
jgi:Sros_3716        180 egAGVVFPAHGVSLALRAEAAARGLT-IIDATCPLVAAAHAEVARFTERGDLTVVIG-RSGDAAVSAVLGQ-ApES---- 252 Strepto...
instpast:LEPBI_I1588  70 --ATVVFSAHGVSPEVVKEATERKMK-IGDATCPLVTRVHKKARNIRDT-HQIIYIG-HRGHDEAIGTMGEAE------- 137 Leptosp...
Q8F3I3                69 --ATVIFSAHGVSPSVVEAAKQRGMK-IGDATCPLVTRVHRKARKIKDT-HQIIYIG-HEGHDEAIGTMGEAE------- 136 Leptosp...
tigr:RIEPE_0555       66 --SILIFSAHGVSRSIFLEAKNRNSLsILDATCPLVKKIHTRIHRASKNSQDVILIG-DPKHPEIQGSVGHYE-RNersk 141 Candida...
3SZL_B               153 MYLVE------------SPDdVWKL-Tvkn--eeKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGprKDDICYATTNRQE 217 Escheri...
jgi:Trad_1220        163 TTVVSvignr---khdpDLAdPETV-Tvpd--peKVVVLTQTTLSVDDVQKTIAVLKRRFPALVIppSDDLCYATKNRQD 236 Trueper...
WP_013614360         146 TILIGvqgk-----vggGLHdPRTV-Qvpd--peRLVVLTQTTLNVDDTRETVAILKRRFPALVVppSEDLCYATKNRQD 217 Deinoco...
WP_015236935         146 TIIVGvlgk-----ngpGLHdPHTV-Qvpd--pdKVVVLTQTTLSVDDTRRTVAILKERFPALVIppSEDLCYATKNRQD 217 Deinoco...
WP_014685178         146 TILVGvlgk-----tgeGLHdPHTV-Evpd--peKLVVLTQTTLSVDDTRRTVDVLRARFPALHVppSEDLCYATKNRQD 217 Deinoco...
WP_015798759         141 VTFVE------------TPEeARAItLgd----gPVALLAQTTLAVPEWEAIAAIVASQTPNLWQpgRSDLCYATTNRQA 204 Acidimi...
jgi:Sros_3716        253 TVLVEsaadverlrpadPEA---------------ISYLVQTGIPVEQATPVVAALRARFPALRGpdPGDFCYHASDRAS 317 Strepto...
instpast:LEPBI_I1588 138 MFLVE------------SPEdVENL-KgkistekALTYLMQTTLSVEDTKNIVKKIEEVFPFVEHpqKDDICYATTERQD 204 Leptosp...
Q8F3I3               137 MFLVE------------SLEdIISL-KdkidpnkPLTYLMQTTLSVADTKNIIDQISKTFPFVEHpsKDDICYATTERQE 203 Leptosp...
tigr:RIEPE_0555      142 IHVVN------------SLHdIDHI-Nlrn--teDLIFSTQTTLSIDHTKLMIKKLISKFPKVEGpsSSEICYATRNRQE 206 Candida...
3SZL_B               218 AVRALA--EqAEVVLVVGSKNSSNSNRLAELAQRMgkR-AFLIDDAKDIQEEWVKEVK--CVGVTAGASAPDILVQNVVA 292 Escheri...
jgi:Trad_1220        237 AVKRIA--PhVDLFLVVTSDYSSNGMRLLELAHDLt-GnARRIESVRDLRPEWFEGVR--SVGVTSAASTPDDLVQDLVA 311 Trueper...
WP_013614360         218 AVKAIA--PqVDAFLVLTSTHSSNGMRLLELSRDLc-GrAERLETAADLAHIDLTGVT--SIGITSAASTPDDLVQEVVA 292 Deinoco...
WP_015236935         218 AVKSIA--PqVDAFLVLTSTHSSNGMRLLELAEQQc-GrAYRLETVRDLSSIDLGDVR--SLGITSAASTPDDLVQAVLQ 292 Deinoco...
WP_014685178         218 AVKTIA--PnVDAFLVLTSTHSSNGMRLLELAAETc-GrAERLETAADLAGLDLGGVR--SVGITSAASTPDDLVQEVVA 292 Deinoco...
WP_015798759         205 AVRALA--ErVDAMVVVGSANSSNTRALERVATSAgvGhVERVNRPSELVGPF-EG----IVGVTAGASAAESVVKDVVA 277 Acidimi...
jgi:Sros_3716        318 AVASITgaS--DLLLIAAGSHCPDARHVVRLAEPAg-VpAQVVTGVADLCPDRLREAA--TVALTSARSAPAGLSEQIVT 392 Strepto...
instpast:LEPBI_I1588 205 AVQKML--GsVDAMLVIGAENSSNSVRLCQLAKKTr-PaSFQISKKDDVNPKHIIESGikILGITAGASSPQVLVDEIVE 281 Leptosp...
Q8F3I3               204 AVSLMM--DkIDAMLVIGADNSSNSLRLLQLAQKSk-PhSFKVSTADDLSKEYIQNNEikILGLTAGASTPQVLVDEIIS 280 Leptosp...
tigr:RIEPE_0555      207 ALRELS--KkSNTILVVGSKNSSNSNSLLKLSRKLgkE-GFLIDTIKEIEKISFNRSL--PIGLTAGASTPSSMIFEVIK 281 Candida...
3SZL_B               293 RLQ 295 Escherichia coli K-12
jgi:Trad_1220        312 yfr 314 Truepera radiovictrix DSM 17093
WP_013614360         293 HFR 295 Deinococcus proteolyticus
WP_015236935         293 NFv 295 Deinococcus peraridilitoris
WP_014685178         293 HFR 295 Deinococcus gobiensis
WP_015798759         278 ALa 280 Acidimicrobium ferrooxidans
jgi:Sros_3716        393 ILs 395 Streptosporangium roseum DSM 43021
instpast:LEPBI_I1588 282 EIL 284 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
Q8F3I3               281 KLK 283 Leptospira interrogans serovar Lai str. 56601
tigr:RIEPE_0555      282 RLN 284 Candidatus Riesia pediculicola USDA
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