5DOQ


Conserved Protein Domain Family
Cyt_bd_oxida_II

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pfam02322: Cyt_bd_oxida_II 
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Cytochrome bd terminal oxidase subunit II
This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.
Statistics
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PSSM-Id: 426719
Aligned: 583 rows
Threshold Bit Score: 92.9295
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DOQ_B            3 LEVIGISVLWLFLFGYIIVASIDFGAGFFSvysHWA-----N-QqhiLHRIIQRYLSPVWEVTNVFLVFFFVGIVGFFPK 76  Geobacillus ...
WP_014174765      2 LANLTLGVMWIGLTCYALFGGADFGAGLWD---LLAgrsgpGaP---RRALIEHTIGPVWEANHVWLIFVVVLLWAGFSP 75  Streptomyces
jgi:Cwoe_3724     3 LYDVPLIFALVGLILYVVLAGADFGAGFWQ---LAAgrgerGsR---IREHAHASMAPVWEANHVWLVFILVIAWTCYPE 76  Conexibacter...
tigr:MSMEG_5606   3 QATFVAMAMFLGVVIYALFAGADFGSGFYD---LTAgdarsGaK---VRTLVDHSIGPVWEANHVWLIYILVIWWTGFPR 76  Mycolicibact...
Q5YZF8            4 LSDVVASAMFAGVVAYALFAGADFGSGFWD---LTAggarrGgR---LRVLIDHSIGPVWEANHVWLIYILVFLWTAYPG 77  Nocardia far...
WP_020943526      1 MTDLIAVVLFIGVIAYALFGGADYGAGFWD---LTAggaarGrP---VRELVNVSVSPVWEANHTWLIFCFVTIWTAFPQ 74  Streptomyces...
WP_014443406      1 MSVTVAAILVLALTLYACTGIADYGAGFWD---LTAggrdrGrL---PRSLIDNAVTPVWEANHVWLIYVLVLCWTGFGS 74  Actinoplanes...
Q82LT6            2 IEDVVAWVLLAVVAAYACAGGADYGAGFWD---LVAggperGkR---PRWLIDHAMEPVWETNNVWLIFILVIMWTGFPV 75  Streptomyces...
WP_020941511      2 IAGVIAVFLLLVIAAYACGGGTDYGAGFWD---LTAggaerGeR---PRRLIDHAMEPVWEVNNVWLIFVLVVMWTGFPV 75  Streptomyces...
WP_013678392      1 MSTAVAVVLLVAVIAYAVLGGADFGAGFWD---LTAggpqrGaR---PRDLVERAIGPVWEANHVWLIFILVILWTSFPE 74  Pseudonocard...
5DOQ_B           77 TAYYYGSILLVPASIAIVLLAIRGSYYAFHTYG-E-TE-RNWYLLAYGLTGLFIPASLSIVLtiseGGFVEENAAgvald 153 Geobacillus ...
WP_014174765     76 VFAAVMSTLYIPLTLTALGIIARGAAFAFRKAStElWQ-KRLFGACFALSSVLTPFFLGTVA----GGVASGRVPpglaa 150 Streptomyces
jgi:Cwoe_3724    77 AFASIASTLSIPLFIAAIGIVFRGAAYALRAGTsQrRE-LRVIDTVFAVSSILTPFALGTVI----GAIASGRVPvgnaa 151 Conexibacter...
tigr:MSMEG_5606  77 TFAAATTTLFIPLALALTGIVLRGASFAFRKYSaTvSQ-ARLFGAIFAASSLISPFFLGTVA----GAIASGRVPaeg-y 150 Mycolicibact...
Q5YZF8           78 AFAAIMTTLFIPMSLALLGIVLRGANFAFRKYSaTiNQ-ARLYGALFAGASLITPFFFGTVV----GAVASGRVPadg-y 151 Nocardia far...
WP_020943526     75 AFTAMTTTLYIPLGLAALGIVARGSGFAFRHALaQgRG-ELVSGVAFACSSVLTPFFFGAVA----GGIASGRVPsag-h 148 Streptomyces...
WP_014443406     75 TFASVMSTLYIPLALALLGIVLRAAGFAMSKDAa-rARmRHLAGWLFGVGSFLTPFCLGTAV----GAVLTGRIPvgnaa 149 Actinoplanes...
Q82LT6           76 LFQTVFTAMWLPLALAAVGLVLRGAGFALRKPTrRlAR-RRIVGAVFALSSLLTPFFLGAAV----GGLATGRVapg--t 148 Streptomyces...
WP_020941511     76 FFQQVFTTMWLPLTLAALGIVLRGAGFALRKPMrRlVG-RRLYGAVFAVASLLTPFFLGAAV----GGVASGRVsat--t 148 Streptomyces...
WP_013678392     75 AYASITLTLFVPMMIAALGIVLRGASFAFRKTVvAlRY-RRIFGAAFAASSVLVPYCMGAIV----GGIASGRVPaggva 149 Pseudonocard...
5DOQ_B          154 ygKLFa--SPLSWSVVLLSVTSVLYISAVFLTYY-A-DaaGD-EQARAllRRYALLWS-GPTMLSALLIIyqlryhnpe- 226 Geobacillus ...
WP_014174765    151 gdLITswlNPTSLLGGVLAVLTCAHLAAVYLCAEtErLg-QPeLGAWF--RSRALISGlAAGAVALAGIAilhadaprlf 227 Streptomyces
jgi:Cwoe_3724   152 gdAWTswtNTTSLTIGVLAVVTSAYIAAVYLAADaArDg-DAeMEEAF--RHRALGTGlVAGVVAVAGLLvlrddvrsly 228 Conexibacter...
tigr:MSMEG_5606 151 gdRIGswlNPTSLVGGFLAVATCVFLAGVFLTADaArSg-DNgLADSL--RRRTLAVGvVTGLIVFAGLYpvahdaptlt 227 Mycolicibact...
Q5YZF8          152 gdLVGswvNPTSLIGGTLAVGTSAFLAGVFLTADaArSg-DDaLAAYL--RPRTLVVGaVTGAFAIAAIApirrdaptlg 228 Nocardia far...
WP_020943526    149 gdALSswlNPTSVLGGVLAVTVCAYLAAVFLTGQaRrRa-DTpLEEAF--RHRAFAAGiVAGLVALVGVFvlradsprlf 225 Streptomyces...
WP_014443406    150 gdEITswlNPSSILAGLLTVAVGAYVSAVYLLAEaHrHg-TAaLHGYF--RFRARAAGvTGLLLGLGLLLalhvderqmf 226 Actinoplanes...
Q82LT6          149 kaSADawaNGTSVIAGLLTIAATAFLGAVFLTADaRrFd-AAdLVGYF--RLRAWCSLgVIAVLAVVGLAvthddaryvh 225 Streptomyces...
WP_020941511    149 taSTDawaNPTSLLFGLLAIACSATLGAVFLAADaRrFe-APdLDRYF--RPRALAALgCVAVLAIVTLVvthgdaphvw 225 Streptomyces...
WP_013678392    150 gdPARswiNPTSVVGGVLAVAAAAYLAAVYLVQDaRrLd-EPdMAQHF--RRRALVSAvAVAVIAAAGAFvlradaghlf 226 Pseudonocard...
5DOQ_B          227 --hydnlwnvA--WMLVISFLFFVITV----WLLgRQrrfgwafiALLFQYAFAFYAYGISHYPYLLYPYLTIYDGFTNE 298 Geobacillus ...
WP_014174765    228 -hglthralpLvvLSACAGLAALALLrr-gpGLA-RP--------LAALAVAAILWAWGVAQYPAMLVPGVTVGDAASTH 296 Streptomyces
jgi:Cwoe_3724   229 delvsgdglpAliVSALAGIGTLALVArrsyEWA-RY--------SAALAVAAVIAGWALAQSPVLLPG-LTVEQAAASH 298 Conexibacter...
tigr:MSMEG_5606 228 -aglrtyaapLlvIALLAGVATVWLVFrrryAIS-RI--------PAAVAVAAVVTGWGVGQYPWLLVDEVTIADAAGAD 297 Mycolicibact...
Q5YZF8          229 -hellgralpLivVSAAAGVLTLVLVYrgrfGWA-RV--------SALVAVAAIVLGWAVAQTPWILVDQLLIADAAGAR 298 Nocardia far...
WP_020943526    226 -hqlstvgapLlaVSGLCGLAALLLLRkggpPVV-RT--------LAAIAITTVVAGWGVAQYPYLLGTHLTIQQAAAPP 295 Streptomyces...
WP_014443406    227 -drvvqrgwpLllLSLALLAGSFRLAAgvrvWRM-RL--------VAAGGIAALVGAWAVAQYPYLLPFSLTVQDGAAGP 296 Actinoplanes...
Q82LT6          226 dgltggiglaLvlVAVVSALATAGLLYrtatGWA-RI--------TAVGSVALVVVAWGLAQRPYLIPTSLTVSEAAGAS 296 Streptomyces...
WP_020941511    226 hglthgaglvFvvIAVVATAATVWLLTrasgAWS-RV--------AAVGMVASAVIAWGTAQRPYLIPTSLTIAAGAGAP 296 Streptomyces...
WP_013678392    227 -dgltsralpAviVSGVCGVGALVLLHrdasRGA-RA--------LGVVAVAAAVAAWGLAQSPYVLPESLTFSAAAAPT 296 Pseudonocard...
5DOQ_B          299 TMAMALIVAFIAG 311 Geobacillus thermodenitrificans NG80-2
WP_014174765    297 PVLIACLVSLAVG 309 Streptomyces
jgi:Cwoe_3724   299 DTLVAVVVAVLAG 311 Conexibacter woesei DSM 14684
tigr:MSMEG_5606 298 ATLTGLLIVVVLA 310 Mycolicibacterium smegmatis MC2 155
Q5YZF8          299 STLIGLLVVVALA 311 Nocardia farcinica
WP_020943526    296 ATLWVLIAVSFVA 308 Streptomyces collinus
WP_014443406    297 ATLRWLLIWFVGA 309 Actinoplanes missouriensis
Q82LT6          297 TTLRWLMLVTVIA 309 Streptomyces avermitilis
WP_020941511    297 TTLRWLGIVIIVA 309 Streptomyces collinus
WP_013678392    297 GTLTAVLVAAVLA 309 Pseudonocardia dioxanivorans
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