1KVP,1GFF


Conserved Protein Domain Family
Phage_F

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pfam02305: Phage_F 
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Capsid protein (F protein)
This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion.
Statistics
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PSSM-Id: 308107
Aligned: 9 rows
Threshold Bit Score: 569.51
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1KVP_A     1 SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgE 79 
Q9MBU6    16 AQVPSArIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLW-S 94  Chlamydia phage 2
Q9G059    13 AQIPSVhTTRSKFNRSFGTKDTFKFDDLTPIFIDEILPGDTINMNTKTFIRLATQVVPVMDRMMLDFYFFFVPCRLVW-D 91  Bdellovibrio phage ...
P11333    16 SMFKGNhIPRSKIHIPHKTIRAFNVGEIIPIYQTPVYPGEHIKMDLTSLYRPSTFIVPPMDDLIVDTYAFAVPWRIVW-K 94  Spiroplasma virus SpV4
ABN49839   2 SHIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgE 80 
Q2LL88     2 SNVQTS-ADRVPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYgQ 80  Enterobacteria phag...
Q38041     2 SNVQTS-AEREIVDLSHLAFDCGMIGRLKTVSWTPVIAGDSFELDAVGALRLSPLRRGLAIDSKVDFFTFYIPHRHVYgD 80  Escherichia virus phiK
P19192    16 SEVPTAtIRRSSFDRSHGYKTTFDMDYLVPFFVDEVLPGDTFSLSETHLCRLTTLVQPIMDNIQLTTQFFFVPNRLLW-D 94  Chlamydia virus Chp1
1GFF_1     1 SNVQTS-ADRVPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYgQ 79 
1KVP_A    80 QWIKFMKDGVNA------------------TPLPTVNTTGYIDHAAFLGTINpdTNKIPKHLFQGYLNIYNNYFKAPWMP 141
Q9MBU6    95 NFQKFCGEQDNPddstdf------ltpiltAPAGGFTEGSIHDYLGLPTKVA--GVQCVAFWHRAYNLIWNQYYRDENIQ 166 Chlamydia phage 2
Q9G059    92 NWEKFNGAQDNPsdstdy------liptitAPAGGFENMSIYDHFGIPTQVA--NLEINALPFRAYNLIYNDWFRDQNLI 163 Bdellovibrio phage ...
P11333    95 DLEKFFGENSDSwdvknap-----pvpdivAPSGGWDYGTLADHFGITPKVP--GIRVKSLRFRAYAKIINDWFRDQNLS 167 Spiroplasma virus SpV4
ABN49839  81 QWIKFMKDGVNA------------------TPLPTVNTVGYIDHAAFLGTINpdTNKIPKHLFQGYLNIYNNYFKAPWMP 142
Q2LL88    81 QWINFMKDGVNA------------------APLTPVTCSSGWDSAAYLGTIPssTLKVPKFLHQGYLNIYNNYFKPPWSD 142 Enterobacteria phag...
Q38041    81 QWIQFMRDGVDA------------------SPLPSVTTTKYPDDAGYVGTIVpkSNRIPKFLHQSYLNIYNNYFRAPWMP 142 Escherichia virus phiK
P19192    95 NWESFITGGDEPvawtstnpaneyfvpqvtSPDGGYAENSIYDYFGLPTKVA--NYRHQVLPLRAYNLIFNEYYRDENLQ 172 Chlamydia virus Chp1
1GFF_1    80 QWINFMKDGVNA------------------SPLPPVTCSSGWDSAAYLGTIPssTLKVPKFLHQGYLNIYNNYFKPPWSD 141
1KVP_A   142 DRTEANPNE-------LNQDDARYg---------FRCCHLKNIWTAPLP-PETELSRQMTT----StGMAPVT------- 193
Q9MBU6   167 ESVEVQMGD-------TTTDEVNNyt-------lLKRGKRYDYFTSCLPwPQKGPAVTIGV----G-GKAPIEgly---- 223 Chlamydia phage 2
Q9G059   164 GKIAVPKGD---------GPDNHAdy------qlLKAAKPHDYFTSALPwPQKGMAVEMPI----G-NSAPITyv----- 218 Bdellovibrio phage ...
P11333   168 SECALTLDSsns--qgSNGSNQVTdiql--ggkpYIANKYHDYFTSCLPaPQKGAPTTLNV----G-GMAPVT------- 231 Spiroplasma virus SpV4
ABN49839 143 GRTEANPNE-------LNEDDARYg---------FRCCHLKNIWTAPLP-PETELSRQMTT------------------- 186
Q2LL88   143 DLTYANPSN-------MPEQDYKWg---------VRVANLKSIWTAPLP-PDTRTSENMTT------------------- 186 Enterobacteria phag...
Q38041   143 ERTEANPSN-------LDRDDSRYg---------FRCCHLKTIWSAPLP-PETKLAEQMGI------------------- 186 Escherichia virus phiK
P19192   173 ESLPVWTGDadpkvdpTTGEESQEddavpyvyklMRRNKRYDYFTSALPgLQKGPSVGIGItggdS-GRLPVHglairsy 251 Chlamydia virus Chp1
1GFF_1   142 DLTYANPSN-------MPSEDYKWg---------VRVANLKSIWTAPLP-PDTRTSENMTT----G-------------- 186
1KVP_A   194 ---TKFRDVPNLS-----GTPLIFRDNKGRTIK----TGQLGIGpvdagflvaqntaqaangeraIPS------------ 249
Q9MBU6   224 mnvNSSNPVGKFVld-sqSTPRVLQDLQGNKLSgiaaYNQTGKHvyvns-----------awytvTPQsepaatlengny 291 Chlamydia phage 2
Q9G059   219 -pnAGNGPYPHFNwvqtpGGPGNNGALSQVTFGgqkaISAAGNDpi-----------------gyDPQg----------- 269 Bdellovibrio phage ...
P11333   232 ---TKFRDVPNLS-----GTPLIFRDNKGRTIK----TGQLGIGpvdagflvaqntaqaangeraIPS------------ 287 Spiroplasma virus SpV4
ABN49839     --------------------------------------------------------------------------------    
Q2LL88       --------------------------------------------------------------------------------     Enterobacteria phag...
Q38041       --------------------------------------------------------------------------------     Escherichia virus phiK
P19192   252 lddSSDDQFSFGVsyvnaSQKWFTADGRLTSGMgsvpVGTTGNFpidnvvypsy--fgttvaqtgSPSssstpp------ 323 Chlamydia virus Chp1
1GFF_1       --------------------------------------------------------------------------------    
1KVP_A   250 ------NLWADLSNATSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDG 322
Q9MBU6   292 yttqkpQIYADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARlQRAEYLGGSSTPVNISPIPQ 371 Chlamydia phage 2
Q9G059   270 ------TLIADLSSATAATINQLRQAMMMQSLLELDARGGTRYVEILKSHFNVISLDFRlQRPEYLSGGTIDLQQNPVPQ 343 Bdellovibrio phage ...
P11333   288 ------NLWADLSNATGISISDLRLAITYQHYKEMDARGGTRYVEFTLNHFGVHTADARlQRSEFLGGHSQSLLVQSVPQ 361 Spiroplasma virus SpV4
ABN49839 187 -------------STTSIDIMGLQAAYANFHTDQERDYFMQRYRDVISSFGGKTSYDAD-NRPLLVMRSNFWASGYDVDG 252
Q2LL88   187 -------------GTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGD-NRPLLLMRSEFWASGYDVDG 252 Enterobacteria phag...
Q38041   187 -------------ESNSIDIMGLQAAYAQLHTEQERTYFMQRYRDVISSFGGSTSYDAD-NRPLLVMHTDFWASGYDVDG 252 Escherichia virus phiK
P19192   324 fvkgdfPVYVDLAASSSVTINSLRNAITLQQWFEKSARYGSRYVESVQGHFGVHLGDYRaQRPIYLGGSKSYVSVNPVVQ 403 Chlamydia virus Chp1
1GFF_1   187 --------------TSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGD-NRPLLLMRSEFWASGYDVDG 251
1KVP_A   323 TDQT--------SLGQFSGRVqqTYKHSVPRFFVpEHGTMFTLALVRFPPTATKEIQYLNAKgALTYtDIAgDPVLyGNL 394
Q9MBU6   372 TSSTdsts-pqgNLAAYGTAI--GSKRVFTKSFT-EHGVILGLASVRADLNYQQGLDRMWSR-RTRW-DFY-WPAL-SHL 443 Chlamydia phage 2
Q9G059   344 TSSSttds-pqgNLAAFSTASefGNKIGFSKSFV-EHGYVLGFIRARGQVTYQQGLHKMWSR-QTRW-DFF-WPKF-QEL 417 Bdellovibrio phage ...
P11333   362 TSSTvekmtpqgNLAAFSETMi-QNNYLVNKTFT-EHSYIIVLAVVRYKHTYQQGIEADWFRgQDKF-DMY-DPLL-ANI 436 Spiroplasma virus SpV4
ABN49839 253 TDQT--------SLGQFSGRVqqTYKHSVPRFFVpEHGTMFTLALVRFPPTATKEIQYLNAKgALTYtDIAgDPVLyGNL 324
Q2LL88   253 TDQS--------SLGQFSGRVqqTFNHKVPRFYVpEHGVIMTLAVTRFPPTHEMEMHYLVGKeNLTYtDIAcDPALmANL 324 Enterobacteria phag...
Q38041   253 TDQS--------SLGQFSGRVqqTFKHSVPRFFVpEHGVMMTLMLVRFPPISPLEHHYLVGRnNLTYtDLAgDPALiGNL 324 Escherichia virus phiK
P19192   404 NSSTdsvs-pqgNLSAYALST--DTKHLFTKSFV-EHGFVIGLLSATADLTYQQGLERQWSR-FSRY-DYY-WPTF-AHL 475 Chlamydia virus Chp1
1GFF_1   252 TDQS--------SLGQFSGRVqqTFNHKVPRFYVpEHGVIMTLAVTRFPPTHEMEMHYLVGKeNLTYtDIAcDPALmANL 323
1KVP_A   395 PPREISMKDVF----------RSGDSSKKFKIAEG-QWYRYAPSYVSPAY-----HLLEGFPF---IQEPPs----gDLQ 451
Q9MBU6   444 GEQAVLNKEIYcqgpsvknsgGEIVDDQVFGYQERfAEYRYKTSKITGKFrsnatSSLDSWHLaqeFENLP------TLS 517 Chlamydia phage 2
Q9G059   418 GEQAILNKEIYa--------qGNATDSEIFGYQERyGEYRFRPSEIKGQFrsnfaESLDVWHLaeyFTVKP------SLN 483 Bdellovibrio phage ...
P11333   437 SEQPVKNREIMv--------qGNSQDNEIFGFQEAwADLRFKPNSVAGVMrsshpQSLDYWHFadhYAQLP------KLS 502 Spiroplasma virus SpV4
ABN49839 325 PPREISMKDVF----------RSGDSSKKFKIAEG-QWYRYAPSYVSPVY-----HLLEGFPF---IQEPPs----gDLQ 381
Q2LL88   325 PPREVSLKEFF----------HSSPDSAKFKIAEG-QWYRTQPDRVAFPY-----NALDGFPF---YSALPs----tELK 381 Enterobacteria phag...
Q38041   325 PPREISYQDLF----------RDGRPGIKIKVAES-IWYRTHPDYVNYKY-----QLLEGFPF---LDDAPgttsgdDLQ 385 Escherichia virus phiK
P19192   476 GEQPVYNKEIYcqsdtvmdpsGSAVNDVPFGYQERyAEYRYKPSKVTGLFrsnatGTLDSWHLsqnFANLP------TLN 549 Chlamydia virus Chp1
1GFF_1   324 PPREVSLKEFF----------HSSPDSAKFKIAEG-QWYRTQPDRVAFPY-----NALDGFPF---YSALPs----tDLK 380
1KVP_A   452 ERVLIRH-HDYDQCFQ---SVQlLQWNSQVKFNVTVYRNLPTTRDSIM 495
Q9MBU6   518 PEFIEEN-PPMDRVLAv--STE-PDFLLDGWFSLRCARPMPVYSVPGF 561 Chlamydia phage 2
Q9G059   484 KTFIESN-TPIERSLVvtrPDY-PDLIGDFWFDYTHVRPMVTYGVPAT 529 Bdellovibrio phage phiMH2K
P11333   503 SEWLKEDyKNVDRTLAlkaSDNtPQLRVDFMFNTIAEKPMPLYSTPGL 550 Spiroplasma virus SpV4
ABN49839 382 ERVLIRH-HDYDQCFQ---SVQlLQWNSQVKFNVTVYRNLPTTRDSIM 425
Q2LL88   382 DRVLVNT-DNYDEIFQ---SMQlAHWNMQTKFNINVYRHMPTTRDAIM 425 Enterobacteria phage ID12
Q38041   386 KAILIDH-NDYNACFQ---SQQlLQWNNQARYNVNVYRHIPTVRDSIM 429 Escherichia virus phiK
P19192   550 ETFIQSN-TPIDRALAv--PDQ-PDFICDFYFNYRCIRPMPVYSVPGL 593 Chlamydia virus Chp1
1GFF_1   381 DRVLVNT-NNYDEIFQ---SMQlAHWNMQTKFNINVYRHMPTTRDSIM 424
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