6SDK


Conserved Protein Domain Family
ParB/RepB/Spo0J_N

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pfam02195: ParB/RepB/Spo0J_N 
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ParB/RepB/Spo0J family partition protein, N-terminal domain
Spo0J (stage 0 sporulation protein J) is a ParB family member, a critical component of the ParABS-type bacterial chromosome segregation system. The Spo0J N-terminal region acts in protein-protein interaction and is adjacent to the DNA-binding domain that binds to parS sites. Two Spo0J bind per parS site, and Spo0J interacts with neighbors via the N-terminal domain to form oligomers via an Arginine-rich patch (RRXR). This superfamily represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system.
Statistics
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PSSM-Id: 426651
Aligned: 33 rows
Threshold Bit Score: 48.0439
Created: 26-Apr-2021
Updated: 8-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SDK_B         5 EEIKIADLR--PNPYQPRKHfDDEALAELKESVLQ------------------HGIL-QPLIVRKS-----LKGYDIVAG 58  Bacillus subtil...
AAK91002     100 vSLDPSMIDgsPIADRLPSD-VDPKFEQLEASISQ------------------EGQQ-VPVLVRPHpe--aAGRYQIVYG 157 Agrobacterium f...
O29009       147 GKVETARLI--PTQSRIY----ADELKGRIHELK-------------------RGLA-EPIVVIKKd-----SRYYLVDG 195 Archaeoglobus f...
O66789        20 KEVETDKVVipPIERPLS----ETLIERLVSSIQK------------------LGFI-DPIMVVPEe---qEGYYEVIDG 73  Aquifex aeolicus
O66661        16 TLLPIEDIVipPIQRDLS----ETLIKKLMLSIEK------------------VGFV-DPILVVEGe----EGKYEVING 68  Aquifex aeolicus
P36077        11 TEIPLSEIR---RPLAPVLD--PQKIDAMVATMKGiptasktcsleqaeaaasAGEL-PPVDVLGVrv-kgQTLYYAFGG 83  Saccharomyces c...
O68788        51 VESKTFVDAsvNGRDQTMLT--RESVSDISRTIK--------------------LQQfFPAIGREVn-----GLIEILDG 103 Yersinia pestis...
O64340        70 VEKATMVWLg-NERDQELLN--ESALADLIPSFLT------------------SGQQ-NPAFARRTs-----GIIEIADG 122 Escherichia vir...
2_pfamImport   1 -FVDPKECE--PWEYANRQDeELGNINELIESIKS------------------NKQL-QPALIRKHphphdDVKYEIIFG 58 
O74043        18 REVPLKNVHv-WKEAQARRL-DRSRVRDIAKSIRS------------------EGLQnPPVIQRGGr-----GLYLLISG 72  Cenarchaeum sym...
6SDK_B        59 ERRFRAAKLAG------LDTVPAIVRELS--EALXREIALLENL 94  Bacillus subtilis subsp. subtilis str. 168
AAK91002     158 RRRLRAAVNLR-------REVSAIVRNLT--DCELVVAQGRENl 192 Agrobacterium fabrum str. C58
O29009       196 HHRVVAAAKLG------VKELDAYIIEVP----EDIELGIEKLV 229 Archaeoglobus fulgidus
O66789        74 QHRLEAAKIVG------LEKVPAFVLPKEl-RNYILSFNIEKAP 110 Aquifex aeolicus
O66661        69 QHRLKAAELLG------IREIPAIILPQEt-KDYIISLNVEKAP 105 Aquifex aeolicus
P36077        84 CHRLQAYDRRAretqnaAFPVRCRVLPATp-RQIRMYLGSSLDI 126 Saccharomyces cerevisiae S288C
O68788       104 TRRRAACIFNN-------VKFEILVTKDD--ISLADARQLAKDI 138 Yersinia pestis KIM10+
O64340       123 SRRRKTAIITG-------SDYRVLVGELD--DEQMQQLSQLGND 157 Escherichia virus N15
2_pfamImport  59 RRRHIACLNLG-------IPFLAILKEIPn-VQDAIAFQDAEN- 93 
O74043        73 HHRLAALKYLGak----kSKFLVITKDTEygLDDAKAASVVENL 112 Cenarchaeum symbiosum
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