Conserved Protein Domain Family
Peptidase_S39

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pfam02122: Peptidase_S39 
Peptidase S39
This family contains polyprotein processing endopeptidases from RNA viruses.
Statistics
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PSSM-Id: 111059
View PSSM: pfam02122
Aligned: 15 rows
Threshold Bit Score: 162.548
Threshold Setting Gi: 123874929
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9EB08  363 KREFAWIPESGKYWADEDEDELPPPPKLVGGKLVwenAQETVAVENLNCQRAAGSRpl-----pPSLNLHATSSakEKSP 437  Sesbania mosaic virus
Q2L3H9  218 VQGFKSFAVPMSPPGHSVLEIVHPDDSHMGYASC---VRLKNGEEALMTSVHCISD--------SFKVRSFRNG--IKIP 284  Sugarcane yellow le...
Q9IZF6  208 VAGFDSYSIPQSPPKKSVITLRRADKTHVGFAVC---IRLFNNSNALVTSEHNLRE--------ADAFYSPRTG--RAIK 274  Cereal yellow dwarf...
P09506  206 IDGFKSFTIPQSPPKSCVIPITHASGNHAGYASC---IKLYNGENALMTATHVLRDc-------PNAVAVSAKGlkTRIP 275  Beet western yellow...
Q83737  202 VKGFLTFTIKQSPPRNCILQIQHADGSHAGYATC---VTLFDGTNGLLTAQHVVDDfyegdprkTLKVVSTRNG--NKIP 276  Beet mild yellowing...
Q65968  202 VEGYLSFKIPQNPPKNSVLQVQYKDGSHAGYATC---VTLYNGTNGLLTAYHVAVP--------GSKVVSTRNG--NKVP 268  Cucurbit aphid-born...
Q8JZ11  202 VEGFLSFKIPQSPPKNSVLQVQHPDGSHAGYATC---VTLYNGTTGLLTAQHVVSS--------GCKVVSTRNG--NKIP 268  Beet western yellow...
Q17S70  218 TKGFGSYDMIMSPPKSCVLEMLHDDEQHCGYASC---ILLADGTVGLLTSYHVMEE--------AYWVKSNKTG--NKIK 284  Chickpea chlorotic ...
Q84710  318 IPGVQIKKLREDPPKGVILRCTDQFGDHVGYASA---VKLEKGQTGIVLPIHVWTD------------TVYINGpnGKLK 382  Pea enation mosaic ...
Q91AV6  212 VRGFTTWAVPMKPPKNSILLISHDDGSHAGYATC---VTLHDRQSTTIGLITCSHA--------PINGSVFSTVtgNKIK 280  Beet chlorosis virus
Q9EB08  438 LpkACHSDLLGERLAS---LESCvEKILQKMSCEQYLPSQSSQTTLGQSEAPKLSL---APCYYKQesliLPES----Q- 506  Sesbania mosaic virus
Q2L3H9  285 L--TEFQVLLPANVMDivlLRGP-PEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKe--WMMHNAK----ITGT----D- 350  Sugarcane yellow le...
Q9IZF6  275 L--AEFKVIFKDADLDvaiVAGP-DNWESAFGCGSVHFTTHDRLAKCPAQIYVIDGe-dWRAHSAK----VVGH----F- 341  Cereal yellow dwarf...
P09506  276 L--AEFKTIAKSDKGDvtlLRGP-PNWEGLLGCKAANVITAANLAKCKASIYSFDRd-gWVSSYAE----IVGS----E- 342  Beet western yellow...
Q83737  277 L--DEFRVTYTSEKRDqllMHGP-PNWEGVLACKAVHMIPASSVAKSKATFFALSDg-eWHSSNAE----LVGT----Sk 344  Beet mild yellowing...
Q65968  269 L--SEFRSIMESEKRDlvlLAGP-PNWEGTLACKAVQFQSAQNLCKSKASFYAYDGe-gWISSNAE----IVGIa---E- 336  Cucurbit aphid-born...
Q8JZ11  269 L--SEFKVEIESPTRDlmlMTGP-PNWEGTLACKAVNFQTASNLCKSKASFFTFNGe-aWESSNAE----ITGIspcrK- 339  Beet western yellow...
Q17S70  285 T--SDFRPLTQSQNADlsiLVGP-PNWQGLLGCSAAQYVTVKHLAAGDARIF-YRKngeWYSGVAK----LVGP----H- 351  Chickpea chlorotic ...
Q84710  383 M--ADFTALYEVTNHDsliMTSAmAGWGSILGVRPRPLTTIDAVKLKNYSLFTERDg-kWYVQAAKc---IAPA----E- 451  Pea enation mosaic ...
Q91AV6  281 M--ESFKTLYDDAETDvkiLFGP-PNWESVMGCKALKLVTRDSLAKGPATIYTFGDn-gWTSSQAS----ISGA----Y- 347  Beet chlorosis virus
Q9EB08  507 -QT-LKELVKTSLSATPPPNPVAALdQKPGPSTQS-LKKSVRRRNRR-KSTKKPAQGSPSPA----SPPPTKTS 572  Sesbania mosaic virus
Q2L3H9  351 -GF-YATVLSNTEKGYSGAPYWNGK-SIVGVHKGH-VYGDDSKNYNL-MSPIPPVKGLTAPNfvyeSPSLQGDS 419  Sugarcane yellow leaf virus
Q9IZF6  342 -DN-FAQVLSNTKPGFSGAGYFHGK-TLLGVHKGH---AGKDYNFNL-MAPLPAIPGLTSPKyeieSDPPQGLI 408  Cereal yellow dwarf virus...
P09506  343 -GT-DVMVLSHTEGGHSGSPYFNGK-TILGVHSGAsATG----NYNL-MAPIPSLPGLTSPTyvfeTTAPQGRV 408  Beet western yellows viru...
Q83737  345 cGK-FISVLSDTKSGHSGTPYFNGK-SVLGVHIGS-PKEFESENVNY-MSPIPRFPGLTSPNyifeTTALAGKF 414  Beet mild yellowing virus
Q65968  337 -GKtHASVLSNTDAGHSGTPYFNGR-TVLGVHVG----GAKDENFNY-MAPIPPVYGLTSPSyefeTTAPQGRL 403  Cucurbit aphid-borne yell...
Q8JZ11  340 ----FVSVLSNTDPGHSGTPYFNGK-TLLGVHIGG--AKEENANY---LAPVPPRAGLTTPNyvfeTTAPQGRI 403  Beet western yellows virus
Q17S70  352 -KLnFVNVLSNTEPGFSGTPYFSGN-KIVGVHTG----GDEEENRNY-MAAIPHLEGLTASKyiyeTTAPKGRI 418  Chickpea chlorotic stunt ...
Q84710  452 -GM-F-RVVSDTRPGDSGLPLFDMKmNVVAVHRGTwPSERFPENRAFaILPVPDLTSSSSPKftgcETYSEAET 522  Pea enation mosaic virus-...
Q91AV6  348 -DKnKASVLSITDKGHSGAPYISGK-NVIGIHSG----GDIVDNVNV-CSTIPKIVNLTTPQlvfeTTAPQGRL 414  Beet chlorosis virus
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