2GJW,1A79,5X89,3IEY,3IEY,2ZYZ,3P1Z,2CV8


Conserved Protein Domain Family
tRNA_int_endo

?
pfam01974: tRNA_int_endo 
Click on image for an interactive view with Cn3D
tRNA intron endonuclease, catalytic C-terminal domain
Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9.
Statistics
?
PSSM-Id: 396521
Aligned: 63 rows
Threshold Bit Score: 67.2825
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2GJW_D          224 FDRRYEVYRNLKERGFVVKTGFKFGSEFRVYrkvESVDDLPHSEYLVD-IADSREi----------------------RL 280 Archaeoglobu...
Q5CQC5           23 ILLKYIIYKYFKEKNYIVKDGMKFGVDYILY---HKSPSLVHGKHCILiCKFTYE-----------------------EK 76  Cryptosporid...
Q0UBA7          334 FILRYVVFHHFRSLGWVVRPGIKFAVDYLLY---LRGPAFHHAEFAIMiIPSYSHp----------------------YW 388 Parastagonos...
Q6CJB7          251 LIHQYVAYHHYRSKGWCVRSGIKFGCEYLLY---RRGPPFQHAEYGIMvLDANQSn----------------------DY 305 Kluyveromyce...
EDK45992        288 FIIHYIVYHYFRSKGWCVRSGIKFGCDFLLY---KRGPPFSHAEYCILiMQDNELsvs-----------------finDW 347
EAY05229         76 FARNYSVYRYYRSLLWVVRDGSVFGCEFVLY---HDHPEVVHSSFIVRiLENWDNf-----------------------E 129
XP_675571        99 FLLKCKQY--FEENGYIVKNGDLYGGEYLLY---LTDKKYTHSMYIVYfIKENDIl------------------------ 149
Q8SS95            5 QEKREVLRRMFQERGFVVGDGLKYGVDLLLY---TDCPSKVHSRYGILi---DRRh----------------------TL 56  Encephalitoz...
Q3MHE1          218 HELRYSIYRDLWERGFFLSAAGKFGGDFLVY---PGDPLRFHAHYIAQcWAPEDPi----------------------PL 272 cattle
jgi:OSTLU_26883 245 FALKCAATVHFRLTGWLPRSGLQYGADFVLY---QRHPSLVHSDSTVVlVPDAAArrsfqiddddaphrgvaldngwpDW 321
2GJW_D          281 IDLARAVRLAQNVRKRMVFAYg-----------KNY 305 Archaeoglobus fulgidus
Q5CQC5           77 EKKKENGNNDYCYNKSDLSKYdgy-------eeIIY 105 Cryptosporidium parvum
Q0UBA7          389 TEAPEHESGIEARKKELg--------------kKDW 410 Parastagonospora nodorum SN15
Q6CJB7          306 TWYSSAARVVGGAKKQFVLCYve--------qlIPE 333 Kluyveromyces lactis
EDK45992        348 TQMSGQARVIGGVKKNLVQIYvepptq-defdkIYY 382
EAY05229        130 NEALTITRIGWFLKKRGILCVvkh------tdnIDY 159
XP_675571       150 RDLIKILRISHSIKKNVILILerktdsfnlhnnIVY 185
Q8SS95           57 LDIVGVQRTCASVNKALVVVFfdg-------ldVQM 85  Encephalitozoon cuniculi
Q3MHE1          273 QDLVSAGRLGTSVRKTLLLCSpqp------dgkVVY 302 cattle
jgi:OSTLU_26883 322 PDLQATSRLAVQVSKKFIEAHisa------pknVNW 351
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap