6UVX,2P0Y,2O2Z


Conserved Protein Domain Family
CofD

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pfam01933: CofD 
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2-phospho-L-lactate transferase CofD
This entry contains 2-phospho-L-lactate transferase (CofD), phosphoenolpyruvate transferase and related sequences. CofD catalyzes the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2)diphospho-(5') guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. CofD monomer contains 12 beta- strands, seven of them form a Rossmann fold, and 13 alpha-helices.
Statistics
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PSSM-Id: 426519
Aligned: 213 rows
Threshold Bit Score: 135.262
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6UVX_A            3 ITVLVGGVGGARFLLGVQNLlglgsfadgpskHELTAVVNIGDDAWMHGVRICPDLDTCMYTLgggIDPDRgwghrnetw 82  Mycolicibact...
ADE04696          2 VTFLAGGTGTPKLLDGAAGVfd---------pAETTVVANTGDDVELGGHLVCPDVDTVLFAGggvLDTDRwwgiagdtt 72 
Q18FZ0            2 VTFLAGGTGTPKLLQGAPAVfd---------pAATTVIANTGDDVELAGHLVCPDVDTVLFSEggvLNTNRwwgieddtt 72  Haloquadratu...
jgi:Pden_1116     4 VTLLAGGVGGAKMAEGL-AAlp---------gVDLTVIGNVADDDEFHGLWVSPDIDTLSYSLaglIDRRQgwgvadegh 73 
CCB66759         14 VVALCGGVGGAKLALGLQRVl----------gKSLKLIVNTGDDFEHHGLMVSPDIDTVLYTLsglSDQERgwgradesw 83 
CBW75652          4 yVALCGGVGGAKLAYGLAQVls---------aDELTIVVNTGDDFEHLGLLICPDLDTVVYTLadvADAKKgwgranesw 74 
zuci:PHZ_c2538    4 VLALCGGVGGAKLAFGLSRLlg---------pDELTIAVNTADDFVHLGLHIAPDLDTVVYTLadlADRERgwglagetw 74 
WP_012875801      2 IVALAGGVGGAKLAHGLALSip---------pEDLTVVINTADDFRLYGLYISPDIDTVMYTLagiANPQTgwgvqgdtt 72  Thermobaculu...
jgi:Sthe_2613    12 IVALAGGVGGAKLAHGLALArp---------eAALTVVVNTADDFSLFGLHISPDLDTVMYTLggiANPQTgwgiagdta 82 
jgi:RoseRS_1138   2 IVVLAGGVGAARFLEGLVQVap---------pEEIVAIINTGDDMVFHGLHVSPDIDIVTYTLagiVDESQgwgvrddtt 72 
6UVX_A           83 naKEELAAYgvqpd------------------------------wfglgDRDLATHLVRSQMLRAGyPLSQVTEALCKRW 132 Mycolicibact...
ADE04696         73 atDDELHRLadaaglesgprylpesaqtagrdiarwrrfsgvaafmeigDRDRAVHITRTSLLDEGnTLTEVTRTLADAF 152
Q18FZ0           73 etHTEIAKLankagladdprylsadeqtsgreisrwrrfsgvaefmeigDRDRAVHLLRTSLLDEGkRLTEVIEILADAF 152 Haloquadratu...
jgi:Pden_1116    74 raLEVLARLgqdcw-------------------------------mslgDRDFGLHIWRTMRRMRGdRPSVIAADAARAL 122
CCB66759         84 nfMASLAELggeaw-------------------------------fqlgDKDLALHVLRTQRLRAGeTLTSFTSAIAQQL 132
CBW75652         75 ssQEALARLggpvw-------------------------------fqlgDKDLALHLYRRSLLDGGaSLCDVTETIAKAL 123
zuci:PHZ_c2538   75 gfMSALSRLggedw-------------------------------fnmgDHDLATHVERTRRLAAGeSLSEATAALAGAL 123
WP_012875801     73 naLEMIARYgrdtw-------------------------------fligDRDLATHVLRTELLSSGrTITQVTSELATAL 121 Thermobaculu...
jgi:Sthe_2613    83 aaLEMIGRYgretw-------------------------------fwlgDRDLATHILRTERLRAGaSLTTVTAELAGAL 131
jgi:RoseRS_1138  73 htLSMLAQLgaetw-------------------------------fklgDRDLAVHIRRTELLRAGwTLSEVTDAFRRAL 121
6UVX_A          133 QPGARLLPASDERSETHVVItdptd-----------------gerraIHfQEWWVRYrakvPTHSfAYVGADQATAGPGV 195 Mycolicibact...
ADE04696        153 DLDVSLRPMSDDPVATLIHTde-----------------------gtMHfQEYWVHRradpAVRDvEFRGADDATITDAV 209
Q18FZ0          153 EVDINLIPMSDDPVSTLIHTevgaesettekqttenesetaetaaeiMHfQEYWVHNraepPVLDvEFRGVDAATPTQSV 232 Haloquadratu...
jgi:Pden_1116   123 GVGPRIVLPTDDRVQTRVRTda-----------------------gwLSfQEYFVREkcapEIRElRLDGIEAARPTPEA 179
CCB66759        133 GITATILPMSDQPVRTIVETpd-----------------------gdLPfQDYFVKHrcepKVSAiRFEGAESAHVSDAV 189
CBW75652        124 GVKHSIVPMSDDPVRTIVETde-----------------------gdLPfQTYFVKRrcepRVSGfRFEGASLARLSSPF 180
zuci:PHZ_c2538  124 GVLHRVTPMSDDPVRTRLATdr-----------------------gdLSfQHYFVRErcapRVAAiRFEGTPGARMSPGL 180
WP_012875801    122 GVRSKLLPMCNEPVSTTIFAtdg----------------------rvLEfQEYFVRYrhepEVARvEFAGIDRAQATQEV 179 Thermobaculu...
jgi:Sthe_2613   132 GIRAAILPMCDEPVATIVETpd-----------------------gdLAfQDYFVRRrqadEVRGvRFEGIEAATIPPGV 188
jgi:RoseRS_1138 122 KVGVRLLPMSDDQVATEICTpv-----------------------gwLHfQQYLVQRrardEVLGvRFIGIDRARPAPGV 178
6UVX_A          196 VEAIGDADI--VLLAPSNPVVSIGPILQIPGIRGALRSTSAPVIGYSPIIaGKPLRGMADECLKVIGvestsqAvgefFg 273 Mycolicibact...
ADE04696        210 ADALEEP----VVVGPSNPVTSIGPMLAIDGFADAL--DDTPVVAVSPFVeDTAFSGPAADLMAGVGyepstaGvaaaYp 283
Q18FZ0          233 KTALTEP----VVIGPSNPVTSIGPMTAMDKFESAL--KNTSVVAISPFInDRVFSGPAASLMKAVGfepstaGvaeaYp 306 Haloquadratu...
jgi:Pden_1116   180 LAAIAEAEA--IVIAPSNPLVSIAPILAVLGIAEGLRQARVPRIAVSPFIaGKVVKGPADRMMAALGlradavGvaerYa 257
CCB66759        190 QKALQSPMLraVIICPSNPFLSIDPILATPGALDLLDRVDAPVIAVSPIIgGAAVKGPTAKIMAQLHmptnskAiaehYr 269
CBW75652        181 EAALSTPDLagVILCPSNPFVSIGPILALPGVRDRLHACNVPVLAVAPLVgGEAVKGPLTKMMHELGmsvsvgEiaslYa 260
zuci:PHZ_c2538  181 AGALARDDLaaIVFCPSNPYLSVDPILAVDGVRAALSGCPVPKVAVSPIVgGQAIKGPAAKLMAELGapdgnaGvaahYa 260
WP_012875801    180 LAAIRSAEF--IVFCPSNPFVSIGPILNVRGIRGAIDASSAPKVAVSPIVgGSAIKGPAADMMRSMGfevsplGiakyYr 257 Thermobaculu...
jgi:Sthe_2613   189 AAALREAAA--VVLCPSNPIVSIGPILAVPGFRDLLRDVSAPVVAVSPIVgGAALKGPADRMLASLGhevsaaGvaalYr 266
jgi:RoseRS_1138 179 IEALQQADA--VIIAPSNPVVSVGTILAVPGMRDAVTSTPAPVVAVSPIVaGAPIKGPAAPLMRAVGldvsarGvavcYr 256
6UVX_A          274 aragtglLDGWLV 286 Mycolicibacterium smegmatis MC2 155
ADE04696        284 ------fADAFVL 290
Q18FZ0          307 ------fADAFIL 313 Haloquadratum walsbyi DSM 16790
jgi:Pden_1116   258 g-----lADVLVI 265
CCB66759        270 g-----iIDGLII 277
CBW75652        261 d-----fLDLLVI 268
zuci:PHZ_c2538  261 g-----lIDGLVL 268
WP_012875801    258 g-----iVNGIVI 265 Thermobaculum terrenum
jgi:Sthe_2613   267 d-----fLDGIVI 274
jgi:RoseRS_1138 257 g-----vIDTLII 264
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