Conserved Protein Domain Family
CbiM

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pfam01891: CbiM 
Cobalt uptake substrate-specific transmembrane region
This family of proteins forms part of the cobalt-transport complex in prokaryotes, CbiMNQO. CbiMNQO and NikMNQO are the most widespread groups of microbial transporters for cobalt and nickel ions and are unusual uptake systems as they consist of eg two transmembrane components (CbiM and CbiQ), a small membrane-bound component (CbiN) and an ATP-binding protein (CbiO) but no extracytoplasmic solute-binding protein. Similar components constitute the nickel transporters with some variability in the small membrane-bound component, either NikN or NikL, which are not similar to CbiN at the sequence level. CbiM is the substrate-specific component of the complex and is a seven-transmembrane protein. The CbiMNQO and NikMNQO systems form part of the coenzyme B12 biosynthesis pathway. The NikM protein is pfam10670.
Statistics
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PSSM-Id: 426497
Aligned: 98 rows
Threshold Bit Score: 69.9158
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012448360   5 HLPDGIIPVPWWLAGYLVAVLIIYLLL-----SRVDSTearyrIPKAAM-AAAFMLVAMSVPLGF-----LPIHLSMAVL 73  Natranaerobius ...
WP_013442952   2 NFPDHLLPTELCWAANALSLAIILACVksapwRHLKDT------SLLNVfMAGIVGLMLVWAVNAgikpgLNFHLLGATL 75  Methylovorus
WP_013294148   2 NLPATLFTGDSLLLANYAFAFLLYRAVrcapwQILLKN-----QDMFNAlIGLIFCTAAFWQMSAgirpgFNFHLIGATL 76  Gallionella cap...
WP_013030114   2 NLPAQLFANDWLWLANFVFGFLLYRAVreaswRNLLDN-----SIMVHAlTGLLFGAFVFWQFNAgirpgFNFHILGSTL 76  Sideroxydans li...
Q31F63         2 NLQDDGLSWIWLLSGGVLYFLAMIWSLktapwHKVLDK-----E-SQHVfLGATVMVFLLWNSGAsigsgLTFHLLMAAL 75  Hydrogenovibrio...
Q1H3Z8        16 NLPDYLVPVAWQWIANALALTLLAYAVikapwRHLSDP------ALQHVfLGSIVTLMVIWSIKAgirpgLNIHLLGATA 89  Methylobacillus...
WP_012654291   2 HIEVGIIDPARVALANAAALSLVAsq----lpALWRHP-----LMLPKTaLAAIAFSIMMQVWHLpv-gpSELHLIGATT 71  Agrobacterium v...
WP_011793268   2 HIEIGILSQDKIAYASVAATALLGah----alPLLKSP-----TAWLRTlLAAFFFSVLMQVWHMpi-gpSELHFVGAMP 71  Acidovorax citr...
WP_012586100   2 HIEPGILSGAKIAAANLAATALVAae----apQLLRKP-----QRLLRTlLAALFFSVFMQSFHTpa-gaSELHFIGAMP 71  Thauera sp. MZ1T
WP_011767250   2 HIEPGLVSAAKVAVANVAAVALVGah----alQFVRQP-----QLVVRSlLAALFFSLFMQSFHLpa-gpSELHFIGAMP 71  Azoarcus olearius
WP_012448360  74 AGILVGpGIGFLSVFVVNFILAL-VGHGGITIVGLNTLVIGLEVLVGAKifsylL----SK----TTVWKAAFLavipAL 144 Natranaerobius ...
WP_013442952  76 LSLMFG-PQLAIIALALVLLGITaFGMAGWLSYGLNLMLMVVIPAMFSWgv-frWvdrklpnhlfvyIFVVGFF----CA 149 Methylovorus
WP_013294148  77 FLLMFG-WPIALIALTLIMTGSWlYSGQEIATLGINGLLMLAVPMLFGEal-lrFcqrylpknlflfVLLNGFA----CA 150 Gallionella cap...
WP_013030114  77 FLLMFG-WQVATVSITLVMLATWlRTDMALVTLGINGLLMIAIPVLFSDwl-lrFskrhlpknlflfVLWNGFF----CS 150 Sideroxydans li...
Q31F63        76 ITLMFG-AQFAMISMSIALLGVTaLGNAGWLAYGLNAVLMGVIPILIVWwm-avWsyrylernffvfILLNGFL----AA 149 Hydrogenovibrio...
Q1H3Z8        90 LCLMFR-WQLALIALALILIGITaFGMGGWSTLGINFLIMAAIPVAFSYnv-frLvdsklpnhliiyIFACGFL----CA 163 Methylobacillus...
WP_012654291  72 IYLLFGfTPAILGFALGLVLQAFlFEPGDIPHLGVNALSLMLPMMVVHYtlgkrLfsgeIG----KRFNLARVL-----G 142 Agrobacterium v...
WP_011793268  72 IYLLFGfIPTLFGFGLGLLAQALvFEPQDLAHLAINFLSLAVPLVAVHHgvgkrL----------ARISVANVL-----K 136 Acidovorax citr...
WP_012586100  72 IYLTLGfVPTLLGFGLGLLLQGGvFEPADLLHLGVNFLSLAVPLVALHAtlgrrLa---SG----AATRVGSVL-----K 139 Thauera sp. MZ1T
WP_011767250  72 IYLILGfVPTLVGFAAGLLVQGIlFEPTDLVNLGVNTLSLALPLLVLHHtagrrV----------DGLSVRNIL-----K 136 Azoarcus olearius
WP_012448360 145 IVSLVFTVSLVGATVSWAeALPyhqhdcdhdhdhddrshanhnghdshghsegngegietalseihiLTLTGWTAL---L 221 Natranaerobius ...
WP_013442952 150 GVAITLCGLASSFVLTES-------------------------------------------------AIYKREYLGehyL 180 Methylovorus
WP_013294148 151 ALASMLMMASTTLVLLAL-------------------------------------------------THYTWPEIQyhyL 181 Gallionella cap...
WP_013030114 151 MLSIVLNVLVTTLLLLLL-------------------------------------------------SRYSWEQIQhyyL 181 Sideroxydans li...
Q31F63       150 GITSVVTLALSAVVMTWS-------------------------------------------------GVQSVETLEqsfI 180 Hydrogenovibrio...
Q1H3Z8       164 GLTISMCGLSAVLALSAM-------------------------------------------------QAYPPDYLFsnyL 194 Methylobacillus...
WP_012654291 143 LDATYYAGVSAMVGFWLAiSNDg-------------------------------------------lAFADWGRWV---I 176 Agrobacterium v...
WP_011793268 137 LDAMYYAGVTLMVGFWLSiSSDp-------------------------------------------aPVADWALFA---A 170 Acidovorax citr...
WP_012586100 140 LDAAYYAGVAVMVGFWLAmGEVa-------------------------------------------tPFAAWAAFA---S 173 Thauera sp. MZ1T
WP_011767250 137 LDAIYYAGVALMVGFWLSlGDTa-------------------------------------------tPFAAWAGFA---A 170 Azoarcus olearius
WP_012448360 222 VILAV-GITlEAILTAIIANYIYKVKPDL 249 Natranaerobius thermophilus
WP_013442952 181 PYYIFmAWS-EAMLTGMAVTLMAAFRPSW 208 Methylovorus
WP_013294148 182 IPAPIlIFA-EAFATGAVITAFTVSRPEA 209 Gallionella capsiferriformans
WP_013030114 182 VATPIlMLT-EGFVTGMLITAFTVFQPQA 209 Sideroxydans lithotrophicus
Q31F63       181 PYIPLmAIP-EGFSNAMLLLALVLMKPEW 208 Hydrogenovibrio crunogenus XCL-2
Q1H3Z8       195 PYFILiGWS-EAFVTGMAITLMTAFRPHW 222 Methylobacillus flagellatus KT
WP_012654291 177 AYAPV-FAI-EACITFIIVLAVRRIRHLR 203 Agrobacterium vitis
WP_011793268 171 SYLSL-VAV-EPLLTIAITLGATRLRGRR 197 Acidovorax citrulli
WP_012586100 174 AYLPV-ALI-EPVLTVALVRLLQSQAHRP 200 Thauera sp. MZ1T
WP_011767250 171 HYLPV-VLI-EPLVTIALVGLLRPHAAHP 197 Azoarcus olearius
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