2OBC,2D5N,4HA9,4XT6,2AZN,6P8C


Conserved Protein Domain Family
RibD_C

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pfam01872: RibD_C 
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RibD C-terminal domain
The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.
Statistics
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PSSM-Id: 396444
Aligned: 27 rows
Threshold Bit Score: 100.917
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2OBC_A   174 PYIQLKLGASLDGRTAXASGESQW----ITSPQ---------------ARRDVQLLRAQSHAILTSS---ATVLADDPAL 231 Escherichia coli K-12
4XT6_A    39 TWLRANFISSLDGGATVDGTSGA-----MAGPG---------------DRFVFNLLRELADVIVVGV---GTVRIEGYSG 95  Mycobacterium tuber...
Q9XBD7     2 ATVNCNITISADGYSAGHNQTEQRpfgdDGGDGtgdklhawmfdspeeNQAEIDQMTA-ATAFIMGRnmfGPVRGEWDRP 80  Amycolatopsis orien...
OBP69038   2 AKIVYSMLTSLDGYIAGPDGDIGL----PVPETe--------------LHQHFNDMMRQASAVLAGRrmyETMRFWDS-- 61 
Q98JM8     2 KKLILQMQMSVDGFVGANDDHRWQ----LWEWGhdig-------wdeeLKQDFNAVFAGIDTILLSR---KMAEEGYLTH 67  Mesorhizobium loti
Q9F3D0     2 ASLMVDFIISLDGYAAADGWPGFW----GMEGPeyl--------------awLDGDAEKQHTSLMGAttyRLMSGFARem 63  Streptomyces coelic...
Q98HZ2     2 RKLIVFNSISLDGYFTDRHGAMDW----AHSQDp-------------eWNAFVADNAKGGGMLVLGRvtyDLMIQFWP-- 62  Mesorhizobium loti
Q983M6     2 RKLIVTEFISVDGIAEVEK-------------Lpgvt-------wndeMNRFKEDELADSGAMLLGRttyEIFAGSWPee 61  Mesorhizobium loti
Q9XBC6    17 RTLISTSFVSLDGKLDPTGGDPA---------LhstkwtfktvdflpeAYEIKGREQEEAGALLLGRasyELFAPVWPgm 87  Amycolatopsis orien...
Q9L023    25 RTLISTAFVSLDGVVEAPGGEPG---------YrntgwtvklvdflpeAYEIKGREQEEASALLLGRvsyEAFSPVWPdm 95  Streptomyces coelic...
2OBC_A   232 TVRWSELDeqtqalypqqnlRQPIRIVIDSQNRVTPVHR-------IVQQpGETWFARTQEDSREWPETVR-----TLli 299 Escherichia coli K-12
4XT6_A    96 VRMGVVQRqhrqa---rgqsEVPQLAIVTRSGRLDRDMAv------FTRTeMAPLVLTTTAVADDTRQRLAglaevIAcs 166 Mycobacterium tuber...
Q9XBD7    81 WNGWWGDNp----------pFHGPVFVLTHHERDPQPMDggttyhfVTDG------------------------------ 120 Amycolatopsis orien...
OBP69038  62 --PDRETGateverdfadawRDTPKIVFSTTLR-----QvgsnarlVNGD------------------------------ 104
Q98JM8    68 WGNAAKKFpadpfyafaqriVEVRKVVPSDRLK----TSrwerstvVSGD------------------------------ 113 Mesorhizobium loti
Q9F3D0    64 pddp-----------gfegiTAMPKVVFSSTLR---TPLswdntelVPGD------------------------------ 99  Streptomyces coelic...
Q98HZ2    63 -----TPMaaqiapvvaermNAMPKVVFSRTLD----TVswnntelVKSG------------------------------ 103 Mesorhizobium loti
Q983M6    62 tgd------------fadrfNALPKYVASTSLK----ALdwkpaelLTGS------------------------------ 95  Mesorhizobium loti
Q9XBC6    88 ae--------------faryKGLPKYVVSTTLTENDLVDdwgdntiLR-------------------------------- 121 Amycolatopsis orien...
Q9L023    96 ae--------------fpgyRAMPKYVVSTTLAEDDLVTnwgettiLR-------------------------------- 129 Streptomyces coelic...
2OBC_A   300 pehkgHLDLVVLXXQLGKQ-QINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS-DARGLCTLPGLEKladaPQFKF 377 Escherichia coli K-12
4XT6_A   167 gddpgTVDEAVLVSQLAAR-GLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGlARRIVTGPGQVL-----TRMRC 240 Mycobacterium tuber...
Q9XBD7   121 --------IESALEQARAAaGDGEVTILGGATTINQYLAAGLIDEVRLHIVPFTLGA--GTRLFEGVPP------LKLEQ 184 Amycolatopsis orien...
OBP69038 105 --------AETAVRSLKTK--TDGLVILGGADLAADLTRAGLIDEYRLYMHPVVLGG--GKPYFQSGLSLA------LKP 166
Q98JM8   114 --------LPREVNALKAG-EGGDIIVFGGAGFASSLIAAGLVDEFQLFVNPAVLGA--GRRIFDQGGFRN------LRL 176 Mesorhizobium loti
Q9F3D0   100 --------PVPAVRDMKRH-GTRPLRTLGSLTLCRSLLRAGLVDRFRVVVFPVITGAtGRERIFDQYPDVT------LDL 164 Streptomyces coelic...
Q98HZ2   104 --------PAAKLRELKQQ-PGNHMTILGSGNLVAQLAEENLIDEYQFVIVPIMLGA--GRTMFEGIGNR-----LNVKL 167 Mesorhizobium loti
Q983M6    96 --------LPEAVRTLKQG-SGGNIYVHGSLSLAQELLRHGLVDRVRLLSYPGAVGQ--GKPLFPQGEQVA------LEL 158 Mesorhizobium loti
Q9XBC6   122 --------SLDEVAELKQT-EGDPILVHGSATLNRALHEAGLIDRYHLLVFPILLGA--GKPLFSDADLPA----TRLKL 186 Amycolatopsis orien...
Q9L023   130 --------SLDEVAALKEG-EGGPIIVHGSAALNRSLSDAGLIDRYHLLVFPLLLGA--GKRLFSDSDKDA----RKLRL 194 Streptomyces coelic...
2OBC_A   378 KEIRHVGPDVCL 389 Escherichia coli K-12
4XT6_A   241 AHVLTDDSGYLY 252 Mycobacterium tuberculosis H37Rv
Q9XBD7   185 VKSRATTSVTHV 196 Amycolatopsis orientalis
OBP69038 167 LGTESLPQGVTL 178
Q98JM8   177 LGSKAYACGMVV 188 Mesorhizobium loti
Q9F3D0   165 VGSRTFDGRLQL 176 Streptomyces coelicolor
Q98HZ2   168 ARSQAFGNGNVF 179 Mesorhizobium loti
Q983M6   159 ISATPFSNGVVA 170 Mesorhizobium loti
Q9XBC6   187 VEHEVYPNGIQK 198 Amycolatopsis orientalis
Q9L023   195 VEHEVYANGIQK 206 Streptomyces coelicolor
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