5GIN,5ZWO


Conserved Protein Domain Family
Nop

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pfam01798: Nop 
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snoRNA binding domain, fibrillarin
This family consists of various Pre RNA processing ribonucleoproteins. The function of the aligned region is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Nop5p (Nop58p) from yeast is the protein component of a ribonucleoprotein required for pre-18s rRNA processing and is suggested to function with Nop1p in a snoRNA complex. Nop56p and Nop5p interact with Nop1p and are required for ribosome biogenesis. Prp31p is required for pre-mRNA splicing in S. cerevisiae. Fibrillarin, or Nop, is the catalytic subunit responsible for the methyl transfer reaction of the site-specific 2'-O-methylation of ribosomal and spliceosomal RNA.
Statistics
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PSSM-Id: 426441
Aligned: 306 rows
Threshold Bit Score: 174.948
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5GIN_B         147 MDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIV-SRFG-----------------DRGFLTIDslkelgfNEQ 208 Saccharolobus...
Q5CQM4         110 VGIIDSKVSEKYECVKALYKDHFGELASIIINKIDYLEVVkRIIThenf----------edvKLNDI------------- 166 Cryptosporidi...
EEA06551        73 LGNIDKIIEILHKNVINLYRPKFGELSSIIINPIQYLEVVkRCIHvsdi----------tqvQFNDI------------- 129 Cryptosporidi...
XP_001327582    34 llkLRKQ---LHSILTNTFHERFADLASVVTDYKPYAILAkHLATh----------------NEIESEDIrk-------- 86  Trichomonas v...
XP_004179562   130 SFNINEDIKLLHSYVKANYQKRFPELESLITNPIQFIDVI-RLLEslnnpnkneesqleirlEKETT------------- 195 Tetrapisispor...
XP_003685460   104 SKIIQEESSNVFAYIKILYKPRFPELETLLTNPIDFIEVL-KLLEeniteisn-ddyiatllENESN------------- 168 Tetrapisispor...
XP_002554721   136 qpVIQQEVSLLRKLIASIYDQKFPELESLIASANSYAKVV-RLLEtkggg-------klelqELQDT------------- 194 Lachancea the...
Q6CQR9          96 mplFDTELSMVFQCIVDTYKAKFPGLETIVPERKQYVDVV-KMLQqdi-----------pnvQLDQV------------- 150 Kluyveromyces...
ybcl:Ecym_4449  83 QRLIQDEILSVYNEVVSNYNKRFPELPNVVSEQEKYVSVV-KELEarp-----------dvpELGKL------------- 137 Eremothecium ...
Q75A86          71 LPVLRDEAADVYRQLEARYRPVFPELAELVPSQRTYVRVL-RALEt-------------------------------GAP 118 Eremothecium ...
5GIN_B         209 ----RINRILDAAKK------SIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLL 278 Saccharolobus...
Q5CQM4         167 ----LPNSTIMTITIss--stSKRNIPTLEKKESILKCIDFVNQINESKSKILEFLQFQIEAITPNLSALIGPEIAANLL 240 Cryptosporidi...
EEA06551       130 ----LPNSIAMTISIaa--stNTNANISNDTCINIENLIDDAFSLFKKKNELLKFVELEMDKIAPNLSSLVNPNLAAMLI 203 Cryptosporidi...
XP_001327582    87 ---fLTSQQIVACTLsl--qqQLGPEI---ESKDFQEACDLQIAASDVSTQLSEICTKCVEMFAPNMCALVGPEISAILI 158 Trichomonas v...
XP_004179562   196 ----LQKEQILVIIMsvktsfNKEYQFSNTLRNNLIKASNLISQLWQFKEEINSFVTKKISDIAPNLCALIGPYITSLLV 271 Tetrapisispor...
XP_003685460   169 ----ISSEKRLVVIMsiktcfNSSFIFTEDARGKLSSVLELLNILMNSKTEAVQYLSSKIGTIAPNLSTLIGTSIASLLI 244 Tetrapisispor...
XP_002554721   195 ----ISREQLLVLSMamhtgfRQETNLAPKDSELLMDSINVLLELCDLQDSIAQYVASLISQVAPNLCALVGPATSAALI 270 Lachancea the...
Q6CQR9         151 ----LSKEETLVVSMslktdfKEGA---RIDKDLLSKAIHWFDILYNLRDNVSHYVETRIQMVAPNLCALLGPDTAAKLV 223 Kluyveromyces...
ybcl:Ecym_4449 138 ----LNKEQMLLVSMtmqtgfHKEY---KVDSPVIAELIDQYEVLHALKSDITTYISKKMHTIAPNVCALVGQEVAAALL 210 Eremothecium ...
Q75A86         119 ldelLTREQAMLVAMtrpqapRAD---PARWPRELAPHADRHEQLHTAVDAIDAHIVRQAHRLAPTVTALVGPVVAAALL 195 Eremothecium ...
5GIN_B         279 SIAGSLDELAKMPASTIQVLGAEKalFrALRsGG--R--PPKHG--------------IIFQYPAIHtS-PRWQRGKIAR 339 Saccharolobus...
Q5CQM4         241 CVSGGLKNLAEMPSQNIMVLGSLKn--------------NKKNGhfstgpvrlellqsIISQSDIVR-NiQDKYKKKAIR 305 Cryptosporidi...
EEA06551       204 CSTNGLRNLAEMPSQNIMLLGSDRk--------------SRKYGlyttgvlrielqqsYLSKCDIVL-GvPELFKKKALR 268 Cryptosporidi...
XP_001327582   159 THAGGLKQLSQIPSCNIKTFGSNK----SALlGFssRniGNHQG--------------IIYTSELVQ-QtDPEYRDSIFR 219 Trichomonas v...
XP_004179562   272 AYSGGLANLCSVPSCNLASIGKNKhlShELH-SNlsG--VRQNG--------------YLYNSELIQ-SqPANLHKQLLR 333 Tetrapisispor...
XP_003685460   245 SHTGSILELSKVPSCNLASIGKKKysSsAQHiTSvsG--VRQEG--------------YIYNSELIQ-NmPISTHKQLLR 307 Tetrapisispor...
XP_002554721   271 AAAGGLLELSEMPSCNLASIGNSKriSsELD-FHesG--VRQRG--------------HIYHSSLVS-GqPVTIQKQALR 332 Lachancea the...
Q6CQR9         224 THCGSVKELSVVPSCNLASIGQDKtl-hGKS-LDisG--VRQKG--------------YLFYTDVVQ-TqPPEFQKQALR 284 Kluyveromyces...
ybcl:Ecym_4449 211 TYTGGMKELSEIPSCNLASIGKTKhlShVQQ-LDtsG--VRQKG--------------YIFDCELVQ-SqPEALQKQALR 272 Eremothecium ...
Q75A86         196 SHAGSVRELAQVPACNLAAIGAPRhaAhARR-TDasG--VRLRG--------------HVWDTPLVQ-EqPPALQRQALR 257 Eremothecium ...
5GIN_B         340 ALAAKLAIAARVD--------------AFS-GRFIGD-QLNEQLKKRI 371 Saccharolobus solfataricus
Q5CQM4         306 LVSLKCGLCARIDf-------------SSTdKSPDHGvNYRNYILNIL 340 Cryptosporidium parvum
EEA06551       269 LLSSKCSLCARLDl-------------AKSnKDGKYGkNWRDYIIKIL 303 Cryptosporidium muris RN66
XP_001327582   220 NLADKVALCCRVDa-------------SKGnPDGSFGeKSLFEIKEKL 254 Trichomonas vaginalis G3
XP_004179562   334 ILCAKVALASRVDag----------qsGNNkKTDELGnTWKLEILEKI 371 Tetrapisispora blattae CBS 6284
XP_003685460   308 MLCAKVSLAARVDagl--------qiaADTrTDNSLGiKWKEEILDKV 347 Tetrapisispora phaffii CBS 4417
XP_002554721   333 MVCAKVSLCVRVDv-------------SKNsPGGELGlKWRQDVLKRL 367 Lachancea thermotolerans CBS 6340
Q6CQR9         285 MVSAKVALAARADctmgnqvinpdgnsDGNsDASKLGlKWRHEIVEKL 332 Kluyveromyces lactis
ybcl:Ecym_4449 273 MICAKLALASRVDylhhq-----------enthGSLGaTWKEEILDKL 309 Eremothecium cymbalariae DBVPG#7215
Q75A86         258 MLCARLALAARVD---------------ASaPDPALAaRWRADILARI 290 Eremothecium gossypii
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