Conserved Protein Domain Family
PLRV_ORF5

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pfam01690: PLRV_ORF5 
Potato leaf roll virus readthrough protein
This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus.
Statistics
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PSSM-Id: 279954
Aligned: 2 rows
Threshold Bit Score: 748.273
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q84829   5 SEPSPSPQPTPTPTPQK-HERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTKFSSEYYSQSSMQAVPM 83  Potato leafroll virus
P09516 218 PQPTPAPQPTPEPTPAPvPKRFFEYIGTPTGTISTRENTDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAA 297 Barley yellow dwarf v...
Q84829  84 YYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF 163 Potato leafroll virus
P09516 298 FVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLTDCQF 377 Barley yellow dwarf v...
Q84829 164 REGQLLERDATISFHVEAP-TDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDehlEGTGSANRVRR---- 238 Potato leafroll virus
P09516 378 TDGQIVERDAVMSFHVEATgKDASFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCD---ESDVEAERITRhaet 454 Barley yellow dwarf v...
Q84829 239 PPREGHTYMASPH-EPEGKPVGNKPRD-ETPIQTQ------ERQPDQTPSDDVsdagsvnsggpteslRLEFGVNSDSTY 310 Potato leafroll virus
P09516 455 PIRSKHILVSERYaEPLPTIVNQGLCDvKTPEQEQtlvdedDRQTVSTESDIA---------------LLEYEAATAEIP 519 Barley yellow dwarf v...
Q84829 311 DATVD-------------GTDWPRIPPPRHPpeprvsgnsrtvtdfsskaDLLENWDAEHFDPgyskEDVaaatiiahgs 377 Potato leafroll virus
P09516 520 DAEEDvlpskeqlsskpmDTSGNIIPKPKEP-------------------EVLGTYQGQNIYP----EDV---------- 566 Barley yellow dwarf v...
Q84829 378 iqdgrsmlekreenvknktsswkPP----SLKAVSPAIAKLRSIRKSQPLEGGTLNK-------DATDGVSSIGSGSltg 446 Potato leafroll virus
P09516 567 -----------------------PPmarqKLREAANAPSTLLYERRTPKKSGNFLSRlveanrsPTTPTAPSVSTTS--- 620 Barley yellow dwarf v...
Q84829 447 gtlkrkatieerllqTLTTEQRLWYENFKKTNP-PAATQWLFEY 489 Potato leafroll virus
P09516 621 ---------------NMTREQLREYTRIRNSSGiTAAKAYKAQF 649 Barley yellow dwarf virus PAV
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