5DOQ


Conserved Protein Domain Family
Cyt_bd_oxida_I

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pfam01654: Cyt_bd_oxida_I 
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Cytochrome bd terminal oxidase subunit I
This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II
Statistics
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PSSM-Id: 426367
Aligned: 527 rows
Threshold Bit Score: 169.142
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DOQ_A         10 SRILTELTLTVHIIYATIGVGVPLMIAIAQWVGIRKNDMHYILLARRWTRGFVITVAVGVVTGTAIGLQLSLLWPNFMQL 89  Geobacillus th...
WP_012530450    7 ARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAVLFAIGAVSGTILSFELGLLWPKFMVF 86  Geobacter bemi...
WP_012646052    7 ARTLMGVSLAFHIIYATIGIGLPLMLMIAEGISLRNGNDLYHQMARRWVRPAGLLFAIGAVSGTILSFELGFLWPRFMAF 86  Geobacter dalt...
jgi:Tter_1110   7 ARFQMAFSLAFHMIFAAMGIGMPVLMLIAEGLWLRTREKDYLHLARKWAKATAVLFAIGAVSGTVLSFELGLLWPKFMEF 86  Thermobaculum ...
WP_013495156    7 ARLQMAISLGFHMIFASLAVGMPLLMLIAEGLYLRRRDPRYLELARTWAKVTAITFAIGAVSGTALSFELGLLWPAFMEL 86  Thermaerobacte...
Q67NR6          1 ----mAYSLFFHMIFAALGVGMPALLATADYLHLRTRDRDYERLAKTWARATAVLFAIGAVSGTGIAFELGLLWPEFMHF 76  Symbiobacteriu...
jgi:Vdis_1320  13 vRVVTAVGVLAHLAMASSFLGTILLAVVAEYLYIRSHNQFWYNTARTFSVISTIFFGVGAAFGTLVEFGLVTLWSNFISL 92  Vulcanisaeta d...
jgi:Cmaq_1686  18 ARWVSAIGILAHLSLASSFLGTILIAVIAEYLYLVKHDKDWYDKARMFSVVSTIFFGVGAAFGTLVEFGLVTIWSNFITI 97  Caldivirga maq...
EQB65596       28 aelmtIVGIFVHAFFLIFALGFPIIVLTLESIGIVRKDNDFIKLARNASKLWGITFAAGAVTGTLVEFGLVVVWSGSIAL 107 Thermoplasmata...
WP_013335786   22 amvmtiLGIYLHAVFVSFTLGFPLAILAWLIKWYRTGDALFLNYSKTLTMVWAVNFALGAVTGTIVEFGLLDIWPTSILL 101 Vulcanisaeta d...
5DOQ_A         90 AGQVISLPLFME-TFAFFFEAIFLGIYLYTWD--RFeNQKKHLLLLIPVAIGSSASAMFITMVNAFMN-TP--QG----- 158 Geobacillus th...
WP_012530450   87 AGPMIGLAFSMEg-FAFFTEAIFLALYSYGEQ--RL-SRRAQFFCTVPMVVASAISAVFVISANGWMN-TP--SG----- 154 Geobacter bemi...
WP_012646052   87 SGALIGLAFTIEg-FAFFTEAIFLALYIYGEK--RL-SRRALFFCTIPITVAAAASAVFVISANGWMN-TP--SG----- 154 Geobacter dalt...
jgi:Tter_1110  87 AGGIIGVAFALEg-YAFFIEAIFLGLYLYGWD--KL-PPKIHWLCGFPVALSGLASGVLVLSANAWMQ-SP--TG----- 154 Thermobaculum ...
WP_013495156   87 AGPATGAAFTLEg-FAFFTEAIFLGLYLYGWN--RL-SPRAHWLTGIPVAISSAASSVLVVAANAWMQ-NP--VG----- 154 Thermaerobacte...
Q67NR6         77 AGSTVGPAFTLEg-YAFFTEAIFIGLYLYGRE--RM-RPVAHWLTAVAVAVSGAASSFLVTAANAWQQ-NP--VG----- 144 Symbiobacteriu...
jgi:Vdis_1320  93 IGEAIVLPFYLE-LFAFLTEVIILPLYVFTWN--KIkNQVLHWIIGIAAAFGGYYSAYNILAVMASLSmRP--PG----- 162 Vulcanisaeta d...
jgi:Cmaq_1686  98 IGSAIVLPFYLE-LFAFLTEVILLPLYVFTWG--KVrNGWVHWVIGLAAAFGGYWSAYNILAVMASLSmRP--PG----- 167 Caldivirga maq...
EQB65596      108 IASMAAAPMIIE-LYAFLIEIVLIGTYLTTFNrfKK-WKGTHVLIGLGVLFGSNLSAYMILAVNSWMQ-VPwgTGsfvaq 184 Thermoplasmata...
WP_013335786  102 FSSSAFIPLLYEaTIAFIGEAVLVVLFIIAIG--RW-RAGYTLGILITAWLLGSLSGYFILTANAWMN-TPwgLGgipha 177 Vulcanisaeta d...
5DOQ_A        159 ----------------------FEL--K-N----------G------ELVN-I----DPIVAM--F-NPAMPTKV----- 184 Geobacillus th...
WP_012530450  155 ----------------------FRM--V-N----------G------Vas-----diHPLVAF--A-NQAWPHQA----- 180 Geobacter bemi...
WP_012646052  155 ----------------------FRM--V-D----------G------Mpa-----dlHPLQAL--A-NPAWAHEA----- 180 Geobacter dalt...
jgi:Tter_1110 155 ----------------------FEL--V-G----------G------Qpt-----niDPVKAL--F-NPAWGVMA----- 180 Thermobaculum ...
WP_013495156  155 ----------------------VET--L-L----------K------Eph-----rfDPVAAL--FgNPAWPVMA----- 181 Thermaerobacte...
Q67NR6        145 ----------------------VDL--LqS----------Npe------------amNPWTVF--V-NPHWPVMA----- 170 Symbiobacteriu...
jgi:Vdis_1320 163 ----------------------LEVinLyQ----------A------TGQN-VvgltDY--VVkwA-SPADAWNMfwwga 200 Vulcanisaeta d...
jgi:Cmaq_1686 168 ----------------------MIIqnL-A----------A------SNET-IagltSY--LVtwA-KPTDAWNMfwwga 204 Caldivirga maq...
EQB65596      185 tflpwvpslgpqvinpeklktlVTV--LpTig-------sGllsspgAFQLfSnftsNPWISL--F-NPEQNVTY----- 247 Thermoplasmata...
WP_013335786  178 lypflpgy-gpdaanltatlnlAALllhyaingsgsvaltsmnftslVGTYlT----NPWLPM--V-NPDAIVTT----- 244 Vulcanisaeta d...
5DOQ_A        185 ----AHVLATSYMTSAFVLASIAAWHLWKg---NRHI-YHRKALHLTMKTAFIFSVASAL-VGDLSGKFLAEYQPEKLAA 255 Geobacillus th...
WP_012530450  181 ----VHGTFAAYVATGFAMAGFYAADLLRgrktT----QVKKALTLSLAVGTLALPLMLM-SGDWAAEALAEHQKAKLAA 251 Geobacter bemi...
WP_012646052  181 ----VHGTFAAYVATGFAVAGVYAFSILRgtdtV----YHKKALTLALAVAGFFLPLMFI-SGDWAASFVAKHQKPKLAA 251 Geobacter dalt...
jgi:Tter_1110 181 ----LHSTLSTYIASAFAVSAVYAFAILRgkseK----YHQRALNIAMAVAAISALLMPL-SGDASARSVAIRQPAKLAA 251 Thermobaculum ...
WP_013495156  182 ----VHSTLACYAATAFMVAAVYAWAALRghrdP----MRRSALRIALAVGTVAALLMPI-TGDASAKFVARNQPVKLAA 252 Thermaerobacte...
Q67NR6        171 ----VHSTIACYAATGYAVAGVYAWGMLRgrgdP----LRQKALRIALAMGLIAAVTMPL-TGDLSAKVVARHQPEKLAA 241 Symbiobacteriu...
jgi:Vdis_1320 201 nvfiFHGILAAVILTWSIIAAIYLYFYI-----RDKKpERLMMLKILVPTMAILTAIQGFvLGHLQGELVLQDDPLKLAA 275 Vulcanisaeta d...
jgi:Cmaq_1686 205 nvfiFHGILAAAILTWSVVGAIYLYGYV-----REHRpDQAKVLKVIIPGVAVMTAIEGFiLGHDQGELVLQFDPLKLAA 279 Caldivirga maq...
EQB65596      248 ----FHNVLAALVITAFLTSSYLAYKILRg--yGSKE-YNWKGLRVSFLIAAVASFLQAL-AGDAQGRILYTFQRNIFNA 319 Thermoplasmata...
WP_013335786  245 ----LHTLFAAYAIGVGAVALAVSIRFF-----RTHDnKYIKLLKPLLWILAVVLLIEPIvLGHFMGDDVVAYQPLKFTA 315 Vulcanisaeta d...
5DOQ_A        256 AEWHFeTSShA----PLILFGTLEE------DNEv-kYALEIPYALSILAHNHPAAVVTG---LNDIp------------ 309 Geobacillus th...
WP_012530450  252 AEAHFkTMAaA----PLVIGGWPDP------ETGtvrYAIKIPKLLSYLANGDANSVVQG---LDAFp------------ 306 Geobacter bemi...
WP_012646052  252 MEAHFtTMAgA----PLVIGGWPDP------ASGqvlYAVKIPKMLSVLAHREPNAVVEG---LDAFp------------ 306 Geobacter dalt...
jgi:Tter_1110 252 MEGLFhSERgA----GLSIGGWPDL------EREqlrYAVEIPKLLSFLAFHDPNALVRG---LDSVp------------ 306 Thermobaculum ...
WP_013495156  253 MEAQFgTEAgA----PLRIGGLPDP------ETRqvpFAVEIPGMLSWLAYGDTRAVVQG---LDRVp------------ 307 Thermaerobacte...
Q67NR6        242 MEALFvTQArA----PLLIGGLPNP------EEGtvcCAVAVPGLLSFLAYGRLDAEVAG---LDRVp------------ 296 Symbiobacteriu...
jgi:Vdis_1320 276 LEGMFwSG-------------------------------LKVDPLTSFLAYGTFNHAFWG---YFSWp------------ 309 Vulcanisaeta d...
jgi:Cmaq_1686 280 IEGMFwKG-------------------------------LKVDPLLSFFAYGTFNHAFWG---YYSWp------------ 313 Caldivirga maq...
EQB65596      320 TEGIPaNGg-YdpivSLLLYGSPNHffpgsnY------------LASLLPSGD----TLGqltLSAT------------- 369 Thermoplasmata...
WP_013335786  316 LTTLTgGS-------GVYGYEYYDP-------------------VEALFAYGNPYHPLYG---FQYYlsqcralgnttfg 366 Vulcanisaeta d...
5DOQ_A        310 -------------------------eD-----ERPP-------LYIHYLFDVMVTIGVFLMVV---AavyWLGS---Ifr 346 Geobacillus th...
WP_012530450  307 -------------------------lG-----STPd------pRIVHPFFDLMVGSSFVMAAA---A---AW-----Fww 339 Geobacter bemi...
WP_012646052  307 -------------------------hG-----TAPd------pRLVHPFFDLMVGSFFIMAGV---S---CW-----Fww 339 Geobacter dalt...
jgi:Tter_1110 307 -------------------------rD-----QWPn------vVVVRAAFQVMVGLGIFLVVV---S---VW-----Ywa 339 Thermobaculum ...
WP_013495156  308 -------------------------rD-----LWPn------vPVTHIAFQVMVIAGVLMVLV---S---AW-----Yww 340 Thermaerobacte...
Q67NR6        297 -------------------------rQ-----EWPn------vPLVHISFQLMVGAGIAMVLV---G---LY-----Yaw 329 Symbiobacteriu...
jgi:Vdis_1320 310 -------------------------aY-----ERPPaf----vFIFYWVF--MVIFGILLGIW---S---GA-LslwYlf 346 Vulcanisaeta d...
jgi:Cmaq_1686 314 -------------------------aN-----VRPPlapfdflPIFYLGF--MVTLGVLLGVW---S---GG-LslwYlf 354 Caldivirga maq...
EQB65596      370 --------------------------N-----TYG--------PILHAIYYSMIISGVIIVILgvgY---FG-LyskIlr 406 Thermoplasmata...
WP_013335786  367 qlyseldpgmlgylgplanvtlaqncEaavlsMEPl------aPLVSAFYYTMIGAGILLAVA---A---VLALftyLvr 434 Vulcanisaeta d...
5DOQ_A        347 wkw----------------taknwFFGLLVAGGPL-AMIAIEAGWYLAEVGRQPWILR--------------GYMKTAEG 395 Geobacillus th...
WP_012530450  340 lrwrek-----------evtlkrgALILVLIAAPF-GMIALESGWMVTEFGRQPWIIQ--------------GYLRTSEA 393 Geobacter bemi...
WP_012646052  340 rrwqdk-----------aipagkrLLQAVLIASPF-GMIALESGWFVTEFGRQPWIVQ--------------KHMTVAQG 393 Geobacter dalt...
jgi:Tter_1110 340 srfwr-------------rlhtkwLYIALVLSGIA-GYTALEAGWIVTEVGRQPWIIY--------------GIMRTSEA 391 Thermobaculum ...
WP_013495156  341 avwrrrgt-------gqnvlddgrLMRALVAAGPL-GIVALEAGWIVTEVGRQPWIIR--------------GVMRTAET 398 Thermaerobacte...
Q67NR6        330 vrwrrp----------eqvprdrrLLWLLVLSSPL-GYLALEAGWIVSETGRQPWTIW--------------KVMLTADA 384 Symbiobacteriu...
jgi:Vdis_1320 347 pgffgsf--------swaralanfFERSGVYLMPFfAAFASIGGAVSAESGRYPFILvqadpnpngsppiitG-VPVGPG 417 Vulcanisaeta d...
jgi:Cmaq_1686 355 ngffsrf--------nwarviasfLERTGPYAMPLfAALAAIGGAVTSESGRVPFILvdsspnpnggpptvtG-VPIYEG 425 Caldivirga maq...
EQB65596      407 givqgi----------lrmkvetfVLYGSFAGAAL-GIIASVAGWATREMGRHPWTVY--------------GLITYNDV 461 Thermoplasmata...
WP_013335786  435 vpvlsaitdfinneilgvligadnVMPFLASAMAVlSAVAATAGWAAREIGRQPWTVY--------------GLITTNEV 500 Vulcanisaeta d...
5DOQ_A        396 -A------TTSAHVDT-MLVLFCLLYIVLVIASATVLIRMFRRN 431 Geobacillus thermodenitrificans NG80-2
WP_012530450  394 -V------TPNGGLLL-IFATFLMVYLALSVGILRLLLRPQGRG 429 Geobacter bemidjiensis
WP_012646052  394 -V------TSHPDIDL-VLAAFVTVYVLMSIGLLKLLLRPAger 429 Geobacter daltonii
jgi:Tter_1110 392 -V------TPTEGVFE-TLIAVVAIYALLSLALVWLLLKLrdsn 427 Thermobaculum terrenum ATCC BAA-798
WP_013495156  399 -V------TPAPGVVT-TLVAFTLLYVLLSITLVWLLRRIghqp 434 Thermaerobacter marianensis
Q67NR6        385 -V------TPSGSTMAlSMAGFTALYAALAAALVLLLNRLrhe- 420 Symbiobacterium thermophilum
jgi:Vdis_1320 418 gLlnptlyFPVWLAVL--VLIVEIAMPSLAVFMVYLYLRRApky 459 Vulcanisaeta distributa DSM 14429
jgi:Cmaq_1686 426 gLinpnlsLPGWLVAL--IIIVEVAMPALAVYMVYLYTKPKEVK 467 Caldivirga maquilingensis IC-167
EQB65596      462 --------VNSHAITPvFTAAIIALEIAILLAGIWGIYMIYFKK 497 Thermoplasmatales archaeon I-plasma
WP_013335786  501 --------VTVDAITPgFVAFVVAVLLAIAVVGALAMYYVATRp 536 Vulcanisaeta distributa
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