6OXC


Conserved Protein Domain Family
MM_CoA_mutase

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pfam01642: MM_CoA_mutase 
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Methylmalonyl-CoA mutase
The enzyme methylmalonyl-CoA mutase is a member of a class of enzymes that uses coenzyme B12 (adenosylcobalamin) as a cofactor. The enzyme induces the formation of an adenosyl radical from the cofactor. This radical then initiates a free-radical rearrangement of its substrate, succinyl-CoA, to methylmalonyl-CoA.
Statistics
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PSSM-Id: 426362
Aligned: 274 rows
Threshold Bit Score: 377.177
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6OXC_B           49 QTADGFAIRALYTAFDel---pEppLPGQWPFVRGGDPLR-DVHSGWKVAEAFPanGATAD-TNAAVLAALGEGVSALLI 123 Mycobacteriu...
jgi:RoseRS_0544  50 KTYENILLQPIYNIEDiaglpqVnsLPGFEPFVRSTRALG-YVIARWEVCQELP--YPLPReVNEAARSDLSRGLTSLNL 126 Roseiflexus ...
2_pfamImport      1 -TFENILLQPIYNASDiadlphLgsLPGFAPFVRDTRILG-PVRERWQVAQELP--YPTATeVNQAAQADLPRGLTTLNV 76 
WP_009513003     49 RTPEGIALQPLYTRADiagipgLdaAPGSAPFLRGTRARG-YKERPWEIAQEIL--AATPAgYNATLLDALNHGQDSVPL 125 Opitutaceae ...
jgi:Oter_3305    42 RTFEGISLQPLYTRADlagvphLgtAPGAAPFLRGTRKQG-YKDKIWRIAQEST--ASDAEaFNTAIRQDLAAGQDAVVL 118 Opitutus ter...
BAH43664         38 qsHEGIVRQPIYRYEDvktlphLeaLPGEAPFHRGNQQPGeHKEHKWQVCQEIS--ATSAKtFNQAAVDDLARGQTMLHL 115 Brevibacillu...
WP_011735208     51 sTYEGLTINPIYSADDikglphLesRPGYVPYVRSTHVGG-YLEKPWFICQELL--VSLPEeFNSEALFDTSRGQTMLNL 127 Pelobacter p...
WP_012609369     49 KTYEDIDLQPMYWQHEikdlphIdtMPGSAPFVRGTKADG-FLINPWNICQAIS--CSMPEeFNKAAVHDLERGQTGLQV 125 Desulfatibac...
WP_013042549     39 mTPEGIELEPIFWRDVldnlpaSetQPGFDGYLRGTSAAG-YNQEPWEVAQELP--YGTPKeFNDAAREDLMRGQNALNI 115 Coraliomarga...
WP_014561285     45 KTYEGIELKPIYTSDDiknipfLnnYPGFENFVRGTKASG-YHSSEWEIAQEYS--YALPEeLNETLRYDLQRGLNSINI 121 Ignavibacter...
6OXC_B          124 ------------------RVGESGVAPDR---LTALLSGVYLNLAPVILDAGADYRPACDVMLALVAQLDpGQRDTLSID 182 Mycobacteriu...
jgi:RoseRS_0544 127 pldqatlqgldpdaapmaLVGAGGVSLATvddAVTLLEGVTLDRTPLLVAAGANAVPVAALILAAAERSG-VGFDRIGGC 205 Roseiflexus ...
2_pfamImport     77 pldqatrqgidpdaaapaQVGAGGMSLATlddARRLFDQLDLARIPLLIQTGALSLPVAGLLLAAAAERG-LSSDRWQGT 155
WP_009513003    126 tts--------------dacPCCGLAINSpadLAAALAGVSLAHIPVHLAPGADATRLAALYLACAADQG-VAPASLTGS 190 Opitutaceae ...
jgi:Oter_3305   119 rpdlasragrdpdaarpeELGVDGVSLATlddLNTALKDVDLTAVPVNVQTGADALPIAALYLQHAKIRG-VDWTRLTGA 197 Opitutus ter...
BAH43664        116 ivdqatlagldpdealpdTIGHKGVSVFCredIEQAFQGVKLSEVPLYMNTGALGLPILSILLAHVEATD-QKASELRGC 194 Brevibacillu...
WP_011735208    128 vldrptkkgldpaeaetgEVGKRGLSLASvsdLKRAFKGLDLASLPLLCNTGATALPLTALLAAALESDG-VPLKRFKGC 206 Pelobacter p...
WP_012609369    126 vldpavklgqdpgqakaeDVGAMGLSAACagdFAKALAGVDTANIPMFVNAGATALPIASLMAAGQLVSG-KFAASLAGC 204 Desulfatibac...
WP_013042549    116 ildiatlkgidpdsagdyEVGACGLSIACledVKTAFKEIVPDAVSFHIRTGCAGLSVGAMFFAWLKQQG-ADLKAVKGS 194 Coraliomarga...
WP_014561285    122 nldlptqlgidadqskpgEVGKGGLSISGirkMQVLFDNIDLTEHPIHINAGFSALPFTLLFAAFTRELR-LSLMNLKGS 200 Ignavibacter...
6OXC_B          183 LGADPLTASLRD-----RPAPPIEEVVAVASRAAGERG-LRAITVDGPAFHNLGATAATELAATVAAAVAYLRVLTesGL 256 Mycobacteriu...
jgi:RoseRS_0544 206 IGADPLGALAVQgslplSLERSYDLMAQWTAWAHVHAPlLRTILVATHVYHNGGASVVQDLACALATGVAYIRAMQarGL 285 Roseiflexus ...
2_pfamImport    156 LAADPLGNLAAEgslpaSLERCYDLLAEWTRWAMTNAPhLRTIMVSSYVYHNSGASIGQEMGCALATGVAYLRAMQerGL 235
WP_009513003    191 LAADPLAHWAAAgslpsPLASLHDALATWTNDASRKAPaLKTIGVNAAIWGNAGGNAVQELAGAISAAAEYLRELLkrGV 270 Opitutaceae ...
jgi:Oter_3305   198 VSADPLGEWLARgelptTLEELYDNLAAWTKWAGNHAPaLHTIGVNAAMWGEAGGTATQELAFALAAAAEYLRALYrhGL 277 Opitutus ter...
BAH43664        195 IGQDPVAVLLTEgklpcSLQTAYNTMASVTKWAKDQAPaLKTILVQSNPYQDGGGNAVTELAFSLATGVDYLQAMLerGL 274 Brevibacillu...
WP_011735208    207 VGCDPLAELVNEgalriALPVAYDAMCQVTSWAIQNMPgLETIFIQGHPYHDAGASSTEEVAFALATAAEYLREMLtrGL 286 Pelobacter p...
WP_012609369    205 VGADPLGELAAKgaipiSLNAAYDSMTALLMWAKSNARhVRTIIASGSPYHDAGASATQELAFAVATAVEYVRAMQdrRV 284 Desulfatibac...
WP_013042549    195 LGMDPIAVQAAAgalpvKLSELLDEQATLARYCAENAPgVKAITVSTLPYHQAGGSSVDELGAALATGAYYIEQMLerGL 274 Coraliomarga...
WP_014561285    201 ITSDPYDFLLKQgylpySLKQIFDEIKFSTQLMIRSNSpIRTIGVSGLNYNNAGANAVQELAFAFATAVEYLEEMLnrGL 280 Ignavibacter...
6OXC_B          257 VVSDALRQISFRLAADDDQFMTLAKMRALRQLWARVAEVVGDP-G-GGAAVVHAETSLPMMTQRDPWVNMLRCTLAAFGA 334 Mycobacteriu...
jgi:RoseRS_0544 286 DVHVVAPRMQFAFSIGSQFFMEIARLRAARMLWARVVSAFGGDeQ-AQKMRIHGRTSAWTKARFDAYNNMLRATGEAMAG 364 Roseiflexus ...
2_pfamImport    236 DVNEVAPRMQFACSVGANFFLEVARLRAMRMLWARIVAAFDGNeQ-AQRIHLHVRTSAWTKTRYDVYNNMLRATGEAMAA 314
WP_009513003    271 SLETAATRIRFTFAIGPQFFTEIAKFRAFRPLWTRVLAAFGAApGlAARAALHATTSWWNKTLLDPNVNMLRVTTEALSA 350 Opitutaceae ...
jgi:Oter_3305   278 RSESVATRMSFRFAIGPQFFTEIAKFRAFRPLWTRVVTAFGATaDtAAGASVHAVTGHWDKTLLDPHVNLLRVTTEALSA 357 Opitutus ter...
BAH43664        275 SIEDIAARMQFSYSIGSDVFMEIAKLRAARMLWSNIVAAYGGStE-AQKMTIHARTSAWTKTIYDPYVNMLRSTTEAFSA 353 Brevibacillu...
WP_011735208    287 AVNDITPRMRFGFSLGSNFFVEIAKLRAARILWNQVVAAFGGSeQ-ARKMRIHGRTSAYNKTVCDPHVNMLRITSEGFSG 365 Pelobacter p...
WP_012609369    285 EFDVIAPKVCFSFSVGGHFFMEIAKLRAARILWTQIADAFGGNeE-SQKMFMFARTSAWTKTLCDPYVNMLRNTTECFAA 363 Desulfatibac...
WP_013042549    275 TVDEAAKQIRFSFAIGPNFFMEIAKIRAARVLWAKVVAAFGGStD-AQKISIHARTGLYNKTQKDPYVNMLRTTTEALSG 353 Coraliomarga...
WP_014561285    281 AIEEVVKRFKFTFGISSFYFMEIAKFRAARILWNNILKQYNVSeE-NRKIYIHGKTSQYNQTIIDPYVNMLRTTTEAFSA 359 Ignavibacter...
6OXC_B          335 GVGGADTVLVHPFDVAIpggfpGTAAGFARRIARNTQLLLLEESHVGRVLDPAGGSWFVEELTDRLARRAWQRFQAIEAR 414 Mycobacteriu...
jgi:RoseRS_0544 365 VMGGIDSLHVSHFDEAL-----GLPDEFSRRIARNVQIILQEECNFIRVIDPPGGAWAIETLTDQVAQKAWALFQEIERK 439 Roseiflexus ...
2_pfamImport    315 VMGGAHSLHISHFDEAW-----GLPDEFSRRIARNLHIILQEECNFFRLIDPPGGSWAVEKLTDEIAAQAWAFFQEIERH 389
WP_009513003    351 VLGGVDSLHIAPFDELS-----GKTDAFSRRIARNVHTLLAEEFSFTQVADPAGGSWYVEKLTDELGRKAWALFQDIEAR 425 Opitutaceae ...
jgi:Oter_3305   358 VLGGCDSLHIAPFDEVA-----GSSDEFSRRIARNVHTLLAEEFSFAETADPAGGSWYVEKLTDTLARNAWALFQDIESK 432 Opitutus ter...
BAH43664        354 VIGGADSLHVSAFDEAI-----RPVNEFSRRIARNTQIILQEEAHLAKVIDPAGGSWYVEWLTDALAKKAWELFQQVEAH 428 Brevibacillu...
WP_011735208    366 AVGGVDSMHLAPFDEPV-----RVPDRFSRRIARNAQIILQEEARFTIPIDMGGGSYFIEKMTDEFARATWALFQEIEGM 440 Pelobacter p...
WP_012609369    364 AMGGADMIYVAPFDEVA-----RQPNEFSRRVSRNLQIVLQEESRFTQPVDPSGGSWYVETLTNTVAEKAWGIFQEIEKA 438 Desulfatibac...
WP_013042549    354 VIAGVDSLCVGNFDEVT-----RLPDTFARRISRNTQVILQEECELTGVVDPAGGSWAVEWLTNEVCEKSWALFQEIEAK 428 Coraliomarga...
WP_014561285    360 VVGGVDALTTNPFDEVF-----DVPDQFSRRISRNTQIILKEESHLDQVIDPAAGSFFVEALTAQLAESAWKLFQQIDES 434 Ignavibacter...
6OXC_B          415 GGFVEAHD--FLAGQIAECAARRADDIAHRRLAITGVNEYpNLGepALPPGDPTs---------------------pVRR 471 Mycobacteriu...
jgi:RoseRS_0544 440 GGMADALVagFPQSFVAATRAERFSAIAHRREVIVGVNMYpNLKekPLTVRMVDha-------------------avQAE 500 Roseiflexus ...
2_pfamImport    390 GGMAAALAagMPQEAIAATRNERFAAIAQRRDVIIGINMYpNLDekRPEFRQIDhl-------------------qlHAA 450
WP_009513003    426 GGHAAALRtgYLQDLVAKTAQEKLDAVGKRRAGIIGTNLFpNLRetPLAPAACAtsagkpaaapapapakhdgikpvAFR 505 Opitutaceae ...
jgi:Oter_3305   433 GGLTAALRagYPQQLVAKAAGEKADAIAKRRLGLVGTNLFpNLKekPLAPVSVD-----------------------TNV 489 Opitutus ter...
BAH43664        429 GGMLSALEagFPQDLIAQSADQKAASIDTRKKRLVGTNMYaNTAeqPLKAESLLs---------------------iHEE 487 Brevibacillu...
WP_011735208    441 GGMTAAIAnsHPQKRAAATAASRAKRIATRQDVILGTNMYaNITekKLEIPEIDla-------------------giRQQ 501 Pelobacter p...
WP_012609369    439 GGMAKALEqgLPQSMCAEVAEQKAKNIKKRKDVFVGTNMYaNLAekPLEVPVVDha-------------------alQSE 499 Desulfatibac...
WP_013042549    429 GGITGALKagFVQDKVASTAAGMEKQLNGRRMSLVGTNVYpDVAetPLDVKLPDyk-------------------eiKKN 489 Coraliomarga...
WP_014561285    435 GGMFKAIEsgFVQDEVNKIAEAKRKDFAKRKSILVGANMYaNPKeeLPEPKSPDye-------------------tiYKK 495 Ignavibacter...
6OXC_B          472 YAAGF-EALRDRsdhhlaRTGARPRVLLLPLGPLAEh-------nIRTTFATNLLASGGiEA 525 Mycobacterium tuberculosis
jgi:RoseRS_0544 501 RSAEV-QRVRHA------VDPQARQDALGALTQTLAaapd--rlvERAIAAARIGATLG-DL 552 Roseiflexus sp. RS-1
2_pfamImport    451 RAADL-RHSRDN------RSDEACRTALSNLATqr--------svAAVLAAVRAGATLG-EL 496
WP_009513003    506 RAAEQfEALRAAsaafakKTGKAPQIFFARMGPVIQh-------kARADFAAGFFATAGfEc 560 Opitutaceae bacterium TAV5
jgi:Oter_3305   490 RAAELvARVRAR------RRGPQSPAPISDWNAr----------fNAALAAARDGATVG-EL 534 Opitutus terrae PB90-1
BAH43664        488 RAEEA-RSHRLQ------QNATLVSAALDGLGEhnd------elvAIAVKAVLLGATVG-DI 535 Brevibacillus brevis NBRC 100599
WP_011735208    502 RMDAV-ADYRMK------HASTSLAEQLTALSNSIRdnad--qtmATAMEAAKNGATLG-DI 553 Pelobacter propionicus
WP_012609369    500 RAAQV-EEFC--------KAAGNGGDMLKALEEAMKdspaapetmDKAVAAAQAGASLS-AI 551 Desulfatibacillum aliphaticivo...
WP_013042549    490 RSQDI-AAARTA------QSEDADAQVMAALGKILEsngd--tllDSLIAAVEAGATLG-EI 541 Coraliomargarita akajimensis
WP_014561285    496 RVEYI-QKYRIS------GDDQKHKNILDKLQIIADtksy--dlvETAIEAYIDGAAIG-EV 547 Ignavibacterium album
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