Conserved Protein Domain Family
Corona_M

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pfam01635: Corona_M 
Coronavirus M matrix/glycoprotein
This family consists of various coronavirus matrix proteins which are transmembrane glycoproteins. The M protein or E1 glycoprotein is The coronavirus M protein is implicated in virus assembly. The E1 viral membrane protein is required for formation of the viral envelope and is transported via the Golgi complex.
Statistics
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PSSM-Id: 426358
Aligned: 18 rows
Threshold Bit Score: 227.929
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_005352883  13 QEFEEWSLIIFISIIWaLSSILQGGYATRYRFVYVIKLVLLWLLQPLTLGFSIYAAVyfampatylkltgestdyinqtn 92  Common moorhen ...
AIA62237      39 EHLRNWNFSWNVILTV-FLVVLQYGNFKYSKLLYGLKMAILWLLWPLVLALSIFDAW----------------------- 94  BtMf-AlphaCoV/H...
YP_009201733  15 EHLRNWNFAWNVILTV-LLVVLQYGNFKYSKVLYGLKMLVLWVLWPTVLALSIFNAW----------------------- 70  BtNv-AlphaCoV/S...
YP_009199612  14 EHLRNWSFAWNILLTL-LIALLQYGNFKYSKLLYGLKMAMLWLLWPCVIALSITNAW----------------------- 69  BtMr-AlphaCoV/S...
AFD29211       2 SESEEWQIIVFIAIIWaLGVILQGGYATRNRMIYVLKLILLWLLQPFTLVVTVWAAV----------------------- 58  Sparrow coronav...
YP_005352873   2 SDYSEWQLIVFIVIIWaLGIILQGGYATRFRFTYILKLILLWVLQPFTLVVTIWTAV----------------------- 58  Wigeon coronavi...
YP_005352865   2 SDAAEWQLIVFIILIWaLGFILQGGYAARHKVIYVIKLILLWLLQPFTLVVTIWTAV----------------------- 58  Night heron cor...
BAS18869      20 KFLKEWNFSLGIILLF-ITVILQFGYTSRSMLVYVVKMIILWLMWPLTIILTIFNCV----------------------- 75  Equine coronavirus
AIZ74455      14 AIIKDWNFAWSLIFLL-ITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIFSAV----------------------- 69  Middle East res...
ADM33577      14 AAIKDWNFAVSVLLLF-ITALLQWGYPSRCKPLWVVKMFILWLLWPLSIAAAVFAAV----------------------- 69  Bat coronavirus...
YP_005352883  93 AHYQRNyHTSklysrkgldnsetiaqFTLAILFAVLTFVSWCKYMYDSIRLALKTKSAWSFSPETRLIAGIVDMmGNGRC 172 Common moorhen ...
AIA62237      95 ASFDVN-WTY----------------FAFSIVMACITFVLWIMYFINSFRLYRRTQSFWAFNPETDAIITISVF-GKVVA 156 BtMf-AlphaCoV/H...
YP_009201733  71 AEFNVN-WVM----------------FSFSIIMACVTFVLWIMYFVNSFKLYRRTQTFWAFNPETDAIITLNVF-GRTVA 132 BtNv-AlphaCoV/S...
YP_009199612  70 ADFNVN-WAY----------------FGISIFMLVVTLVLWIMYFVNSFRLYRRTRSFWAFNPETDSIIVFSVY-GTTYS 131 BtMr-AlphaCoV/S...
AFD29211      59 DHANKK-DAV----------------FIVSIIFAVLTFISWAKYWFDSIRLLMKTRSAWALSPESRLLAGIMDPmGNWRC 121 Sparrow coronav...
YP_005352873  59 DKGSEPtSAL----------------FIIAVIFSVLTFVSWAKYWYDSIRLAIKTKSAWALSPESRLLACMLDNsGIMHA 122 Wigeon coronavi...
YP_005352865  59 DNGAQPsSAV----------------FIIAIIFAILTFVIWLKYWYDSIRLVIKTKSGWSFSPETRLLVCAIDGmGNVKC 122 Night heron cor...
BAS18869      76 --YALN-NVY----------------LGFSIVFTIVAIIMWIFYFVNSIRLFIRTGSWWSFNPETNNLMCVDMK-GKMYV 135 Equine coronavirus
AIZ74455      70 --YPID-LAS----------------QIISGIVAAVSAMMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPFG-GTTVV 129 Middle East res...
ADM33577      70 --YPIN-PVA----------------FGFAIAFACISGLMWLSYFVSSFRLLCRTGSAWSFMPETNMLLNVPLS-GRTVT 129 Bat coronavirus...
YP_005352883 173 VPLDYMTPILAPVIKHGTLKLHGQKLASGLSVKTVPKHMAVFTPSDTFHYvLRKTIESTEDDNIAVLIYQSDRASNAGLH 252 Common moorhen ...
AIA62237     157 IPVITPPTGITLTVLSGKLLVEGIPIANGVSVTQLPSYVTVAKANTTIIY-QRVGKSLNAASQTGWAFYVRSKNGDYSAV 235 BtMf-AlphaCoV/H...
YP_009201733 133 IPVITAPTGITLTVLNGQLLVEGYKVANGVQVGQLPSYVTVAKPSTTIIY-QRVSRSINVRSNTGWAFFVRSKNGDFSAL 211 BtNv-AlphaCoV/S...
YP_009199612 132 IPVIQAPQGITFTVLSGTLLVDGIKVATGVRIEALPQYVTVAKATTTIVF-HRVGKAVNERTQTGWLFFVRSGYGDYAAH 210 BtMr-AlphaCoV/S...
AFD29211     122 IPIDHMAPILTPVVKHGKLKLHGQELASGISAKSPPQDMVIVSPSDTFHYtFKKPVESNSDPEFAVLIYQGDRASNAGLH 201 Sparrow coronav...
YP_005352873 123 VPLDYLPTALCPVLVRGKFMLHGQCVAKQMTLSSVPRAFYVATPSHTYHYsLRKTFQDPELPDTATYIYLVEKISKADLS 202 Wigeon coronavi...
YP_005352865 123 APVDHLPTALTPVLVMGRFMLNGQLLMAQQTVQTAPRALYVMTPSQTYHFtLKKTFQDPDFKDTATFCYLVDRISKADLQ 202 Night heron cor...
BAS18869     136 RPIIEDHHTLTATIIRGHLYFQGVKLGIGYSLSDLPVYVTVAKVSHLCTY--KRGFLDKIGDNSGFAVYVKSKVGNYRLP 213 Equine coronavirus
AIZ74455     130 RPLVEDSTSVTAVVTNGHLKMAGMHFGA-CDYDRLPNEVTVAKPNVLIAL--KMVKRQSYGTNSGVAIYHRYKAGNYRSP 206 Middle East res...
ADM33577     130 RPILADSPAIQFLILRGEIQFDGFKLGR-CDPGEMPDIVTVAKPASLHWY--KKALTRNVGVKSAIIVYIKYKVGNHRVQ 206 Bat coronavirus...
YP_005352883 253 TiTTSGSGNSR 263 Common moorhen coronavirus HKU21
AIA62237     236 SnPSDSYTEQE 246 BtMf-AlphaCoV/HeN2013
YP_009201733 212 AtDNETMTERE 222 BtNv-AlphaCoV/SC2013
YP_009199612 211 StGTGQMTESE 221 BtMr-AlphaCoV/SAX2011
AFD29211     202 TiTTSKPGDAL 212 Sparrow coronavirus HKU17
YP_005352873 203 SvTTGN--NAA 211 Wigeon coronavirus HKU20
YP_005352865 203 SvTTGS--NYA 211 Night heron coronavirus HKU19
BAS18869     214 StQKGSGMDTA 224 Equine coronavirus
AIZ74455     207 PiTADI--ELA 215 Middle East respiratory syndrome-related coronavirus
ADM33577     207 N-TDEDGERLA 216 Bat coronavirus HKU9-10-1
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