6BFU,6U7H


Conserved Protein Domain Family
Corona_S1

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pfam01600: Corona_S1 
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Coronavirus S1 glycoprotein
The coronavirus spike glycoprotein forms the characteristic 'corona' after which the group is named. The Spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 and S2 pfam01601.
Statistics
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PSSM-Id: 426339
Aligned: 23 rows
Threshold Bit Score: 291.161
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6BFU_B         49 YSRAnnnfd---------vgvlpGYPTK-NVNL--FSPLTNSTLPINGLHRSYQPLMLN---C--LTKIT-------NHT 104  Porcine delta...
YP_005352863   60 SAICpe----------------nGYITStSYDLskIYYLTDGDYPIDGVYKSLQPLKVT---CvpEWHGNsn---fnDTT 117  Night heron c...
YP_005352846   40 RMVRnieggate---rcmyvqegGFIPD-NFTFpqWFVLTNDSTLLQGELTTSQPLIVNghlC--SWq--------sNQQ 105  Sparrow coron...
YP_005352881   53 TDQIildnnltr----nfhvtnqGNIYG-GSYL--LSYITNNSYPIFGVYRSYQPLLVR---C--VFSFSmngnitgNGK 120  Common moorhe...
YP_002308497   45 WLPSaeepk----------sdgkGHFTQ---NVhrFAFLTNGSSPVDQIIRTTQPLLLR---CpqWFGYNg-----sGNW 103  Thrush corona...
AFD29234       41 YQQPqvrgwt-------ddigvdGRIPA-TYPLtnTFYLSNTTTPVDGVYTSLQPLLIR---C--KFKYVn-----dTVN 102  Wigeon corona...
AMD11142      266 LSEChsdycagya--knvfvpvdGKIPE-SFSFsnWFLLSDKSTLVQGRVLSRQPVFVQ---C--LRPVPt-----wSNN 332  Feline corona...
ADI80523      237 VQNCtgnceeyan--nifstepgGIIPE-GFSFnnWFVLTNDSTVLDGRFLTRQPLLVN---C--LWPVPs-----fSEI 303  Mink coronavi...
P10033        249 YELCedyehctgyatnvfaptsgGYIPD-GFSFnnWFLLTNSSTFVSGRFVTNQPLLIN---C--LWPVPs-----fGVA 317  Feline infect...
Q0PL12         21 CSNCtdqcasyva--nvfvtqpgGFIPS-DFSFnnWFLLTNSSTLVSGKLVTKQPLLVN---C--LWPVPs-----fEEA 87   PRCV ISU-1
6BFU_B        105 LSMY---LLPSEI---QTY---SCG------------GAMVk-YQTHDAVRIILDLTATDhI-------SVEVVGQHGEn 155  Porcine delta...
YP_005352863  118 GWKH---YFDGRIkqnPNTiwcPCSqsg------pggAQHNaaGNSTEYIRFHSNITTSVsN-------LLRLYAVDNQy 181  Night heron c...
YP_005352846  106 YRKY---SFNTSCp-lPAD---GCNptwgsgnlklfkGWNNt-KGLTDNIRINVNISQSD-Yrts--agSVGLELEGGGt 174  Sparrow coron...
YP_005352881  121 DWVY---TFNPST---TNG---NCNs-----------PLQNkyNGTVDAIRFVTNFSAFSsE-------ITSFIFRGEHe 173  Common moorhe...
YP_002308497  104 VLKF---NFSESN---------YCNd-----------GYNYngNKVVSHIRLIGAFLASPsVd-----yVFTLQTTSGSt 155  Thrush corona...
AFD29234      103 AGKIltmYFNLTN---NTG---RCD------------GNSEk-VGLVDAIRFQINVTTDI-Lqlt--agSINFTTPDGEl 160  Wigeon corona...
AMD11142      333 TAVV---HFNNDV---------FCP------------------NVTADVLRFNLNFSDTDvYtdsttddQLHFTFDDNTt 382  Feline corona...
ADI80523      304 SQEF---CFASAD----FT---QCN------------GYKL--NSTADVIRFNLNFTHETaAasg--ttFFELNTTGGVv 357  Mink coronavi...
P10033        318 AQEF---CFEGAQ----FS---QCN------------GVSL--NNTVDVIRFNLNFTADVqSgmg--atVFSLNTTGGVi 371  Feline infect...
Q0PL12         88 ASTF---CFEGAD----FD---QCN------------GAVL--NNTVDVIRFNLNFTTNVqSgkg--atVFSLNTTGGVt 141  PRCV ISU-1
6BFU_B        156 YVFVCSEQFNYTtALh------NSTFFSLNS-ELYCFTNN-----------------TYLGILPPDLTDFTVYRTGQFYA 211  Porcine delta...
YP_005352863  182 YYFGCTPTPTPL-TFnlt-senITLFTAEEQ-VHYCYANIng-------------tvSYIGVLPPKITELTVGRYGDIFV 245  Night heron c...
YP_005352846  175 VNITCTNSSTPVtTYs------LLPWARSSGePIYCFANVssps---------qsyiDFMGILPPFVSEIAFDRSGSIYI 239  Sparrow coron...
YP_005352881  174 VSFSCSNTSNVTaHEhll-ivnATTFKSNSN-ILYCYFTSnfng---------tlssFYVGPFPPNIADVTIFRSGNIYV 242  Common moorhe...
YP_002308497  156 YYLNCSTSQRPVg------------FDAEMQ-RNYCYVKTan-------------ytQFIGILPERVADVTFSREGTFYV 209  Thrush corona...
AFD29234      161 YTLHCLNTTLGVgQDyy---psQSRTRQSGV-TYHCYMIYrntsyaysaneytyrvlQYLGPLPASVREIVAFSNGFIYI 236  Wigeon corona...
AMD11142      383 ASISCFSSANVTdQEpaansasQIPFGKTMH-SYFCFANFsqsi----------vsrQFLGILPPTVREFAFGRDGSVFV 451  Feline corona...
ADI80523      358 LYISCYNQSRTEaQVse----gFVPFGNHEG-SLYCYVSYnet------------lqKFLGVLPPSVKEIAISKDGGFYI 420  Mink coronavi...
P10033        372 LEISCYSDTVSEsSSys---ygEIPFGITDG-PRYCYVLYngt------------alKYLGTLPPSVKEIAISKWGHFYI 435  Feline infect...
Q0PL12        142 LEISCYNDTGSDsSFss---ygEIPFGVTDG-PRYCYVLYngt------------alKYLGTLPPSVKEIAISKWGHFYI 205  PRCV ISU-1
6BFU_B        212 NGY-LLGTLPItVNYVRLYRGHl-SANSAHFALANLTDTLITLTNTTISQITYCDkSVVDSIACQRSSHEVEDGFYSDPK 289  Porcine delta...
YP_005352863  246 NGFlYFKIPNV-IEYVQLSHTIphNKQFYTVFYANMTQVLLNISMASINRLLYCDkDSYSSIACAVNQFEPANGFYSTSA 324  Night heron c...
YP_005352846  240 NGYrYFKISPLlNVELQLNFNL--TSDHFSVTWSNYTEVHLNTTNGYIHQIKYCY-DPLDKLACEMNTFQLPDGVYPYTP 316  Sparrow coron...
YP_005352881  243 NGY-YLGYIGMsIHNFSTHHVGltYMSSLRGIFTDQVDVLVNISNSVITNIVYCNhSLVNQIKCQRHLFDLPDGFYSYSS 321  Common moorhe...
YP_002308497  210 NGFgMGSFGQLaRITVDK--GAlaTFNHSWAYFVDEADVLLNITDSQIQGIVYCDkDLYDHLRCQQSSFSLTDGFYSTAK 287  Thrush corona...
AFD29234      237 NGIlLSRIPALhKVDFGLVKSAh-TSDYYVILFADMVDVMVNISATEMQSIFYCI-TPFEQVKCSQKQTTLSDGFYSTSA 314  Wigeon corona...
AMD11142      452 NGYkYFSLPPIkSVNFSISSVE--QYGFWTIAYTNYTDVMVDINGTGITRLFYCD-SPINRIKCQQLKHELPDGFYSATM 528  Feline corona...
ADI80523      421 NGYnYFQTFPIdCISFNLTTGN--TGAFWTIAYTSYTDVMVDVENTAIKRVIYCN-SHINDIRCNQLTPSLPDGFYPVSP 497  Mink coronavi...
P10033        436 NGYnFFSTFPIgCISFNLTTGV--SGAFWTIAYTSYTEALVQVENTAIKNVTYCN-SHINNIKCSQLTANLNNGFYPVAS 512  Feline infect...
Q0PL12        206 NGYnFFSTFPIdCISFNLTTGD--SDVFWTIAYTSYTEALVQVENTAITKVTYCN-SYVNNIKCSQLTANLNNGFYPVSS 282  PRCV ISU-1
6BFU_B        290 SAVRARQRTI-VTLPKLPELEVVQLNISAHM----Dfgear-------------ldsvTINGNT-------SYCVTKPYF 344  Porcine delta...
YP_005352863  325 IEKISRKFTF-VTMPTVQNHSYYSINLTIGG----Cgh-------------------gEYPHLSn-----kTGCYRTDAS 375  Night heron c...
YP_005352846  317 AQQQALPETF-VTTPVYANHTTVVVRTQYTV----Sstgingp---------pswstvELDGAIn-----dTLCVNSRQF 377  Sparrow coron...
YP_005352881  322 VSDVSVPETV-ILLPKEVTYSRVKLTAFAEG----Nifdgvslss-----lilsenktNSNTTFn-----dTICVDTTYF 386  Common moorhe...
YP_002308497  288 YTTNQQRKTIfVTLPKHTYTETISILPNISNpaypDgstngpalg-----wwvgtmnvLFNNSQ-------TLCVNSSFF 355  Thrush corona...
AFD29234      315 IEVLQRQRTF-VGLPMAINITTLNFAISYLN----Tkanpslg--------apqevnlTINGFAd------QFCVTTSQF 375  Wigeon corona...
AMD11142      529 LVKKDLPKTF-VTMPQFYNWMNVTLHVVLND----TekkadiilakapelasladihfEIAHANgsvanvtSLCVQTRQI 603  Feline corona...
ADI80523      498 KAIGFINKTF-VTLPANFDHVYVNITGNVNL----Kaergrpyn-------nggnatlSFQG-----------CIAVSQF 554  Mink coronavi...
P10033        513 SEVGFVNKSV-VLLPSFFTYTAVNITIDLGM----Klsgygqpia-----stlsnitlPMQDNNt-----dVYCIRSNQF 577  Feline infect...
Q0PL12        283 SEVGLVNKSV-VLLPSFYTHTIVNITIGLGM----Krsgygqpia-----stlsnitlPTQDNNt-----dVYCILSDQF 347  PRCV ISU-1
6BFU_B        345 RLETNFMCT----------------GCTMNLrtDTCSFDLSAVNNGMSFSQFCLSTE--SGACEMKIIvT-YVWNYLLRQ 405  Porcine delta...
YP_005352863  376 NINAKQITFvintyt-----hdnwiQWAHKP--GNCPWALNKINNYNTAGTLQVVPEn-QATCCTDNQaS-WLYLASWTS 446  Night heron c...
YP_005352846  378 TVHLNTTVHyta-----------ahLFGTEFvaGTCPFTLPNINNYLTFGSICFSTVn-NGGCTIHVQkVlRHYRYTFGT 445  Sparrow coron...
YP_005352881  387 NFYLKFACGgg------------sfRCSLSCrsAGCPFDLQGLNNYLSFDHICFSLLn-NGGCPIQLL---AYWGSSFSR 450  Common moorhe...
YP_002308497  356 MVNITFKCWlkphpt----kpsdeyKCIGGLptAQVKLPDWPFAPYYSFSQLCLSSTy-QVGYSTFYF---QYWNQGTNK 427  Thrush corona...
AFD29234      376 MVTLNVTCLvhnnts----iipcpqAYTAEIspGDCPFNFLDVNNYLMFDSICFSPSpsGDSCQMVIN---KVWANNRIP 448  Wigeon corona...
AMD11142      604 ALFYKYTSLqgl----------ytySNLVELqnYDCPFSPQQFNNYLQFETLCFDVNpaVAGCKWALVhD-VKWRTQFAT 672  Feline corona...
ADI80523      555 TVNLNHTCTitnagss---gctnayEANVYMtsGSCPFAFDRLNNHMSFSKLCFSTVplGDDCRLDLTvQ-TRYFTGVFA 630  Mink coronavi...
P10033        578 SVYVHSTCKsslwdnifnqdctdvlEATAVIktGTCPFSFDKLNNYLTFNKFCLSLSpvGANCKFDVAaR-TRTNEQVVR 656  Feline infect...
Q0PL12        348 SVYVHSTCKsalwdnvfkrnctdvlDATAVIktGTCPFSFDKLNNYLTFNKFCLSLSpvGANCKFDVVaR-TRTNDQVVR 426  PRCV ISU-1
6BFU_B        406 ---R---LYVTAVEGQTHTGTTS 422  Porcine deltacoronavirus
YP_005352863  447 vnvK---VCFNYQPGTTISIQPQ 466  Night heron coronavirus HKU19
YP_005352846  446 -------IYVSYQPGNQITAMPK 461  Sparrow coronavirus HKU17
YP_005352881  451 vlaT---IYVSYSPGTRITGSKD 470  Common moorhen coronavirus HKU21
YP_002308497  428 rweSkplFYYTYQTGTQYTYVTK 450  Thrush coronavirus HKU12-600
AFD29234      449 m-sS---VYVSYVYGNQIVGVPR 467  Wigeon coronavirus HKU20
AMD11142      673 -------ITVSYKDGAMITTMPK 688  Feline coronavirus
ADI80523      631 ---H---VYVSYKFGLDIVGLPT 647  Mink coronavirus strain WD1133
P10033        657 ---S---LYVIYEEGDNIVGVPS 673  Feline infectious peritonitis virus (strain 79-1146)
Q0PL12        427 ---S---LYVIYEEGDNIVGVPS 443  PRCV ISU-1
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