Conserved Protein Domain Family
Basic

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pfam01586: Basic 
Myogenic Basic domain
This basic domain is found in the MyoD family of muscle specific proteins that control muscle development. The bHLH region of the MyoD family includes the basic domain and the Helix-loop-helix (HLH) motif. The bHLH region mediates specific DNA binding. With 12 residues of the basic domain involved in DNA binding. The basic domain forms an extended alpha helix in the structure.
Statistics
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PSSM-Id: 426334
Aligned: 31 rows
Threshold Bit Score: 83.6659
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003221172   3 MDLFETGSYFF----YL-DGENGALQQLDVAgegspLYPGSEGTlS-PSSCQdplgaeagigegggrgsEgsspAGEAHV 76  green anole
4_pfamImport   1 DDLYDDPCFSSgdlnFFdDLD-ARL-----------LLKPDGhqrlhhh-------------vpsaeeeLeeeaGVEEHV 55 
XP_007228165  14 DDFYDDPCFNTndmhFFeDLD-PRLVHVS-------LLKPDEhg-----------------------------hAEDEHV 56  Mexican tetra
XP_005814488  73 DDFYDDPCFNTtdmhFFeDLD-PRLVHGV-------PLKPEDSFsPsSSLSSsspspcshlhhqlqhpeAe----dDEHV 140 southern platyfish
XP_005449194  14 DDFYDDPCFNTsdmhFFeDLD-PRLVHVG-------LLKPDDSSsSsSSSPSssssspssllhlhhhaeVe----dDEHV 81  Nile tilapia
XP_003214790  25 EDFYDDPCFNTsdmhFFeDLD-PRLVHVGG------LLKPEEphhhg------------------gpgeA------DEHI 73  green anole
P16075        21 DDFYDDPCFNTsdmhFFeDLD-PRLVHVGG------LLKPEEhphtr-----------------apprePt----eEEHV 72  chicken
EOB07757      10 ELFYDSSCLSSpegeFPeDFEPRDLPPFG-------AHQPAE---PaCSE-------------------------EEEHV 54  mallard
Q8QG50        13 EFFYDSSCIPSpeegYTeDYE-HGMSLYGAHkk--dLQESDE----------------------------------DEHV 55  tropical clawed...
XP_852162     13 EYFYDGACIPSpegdFGdELE-ARGAAFG---------ARRA---AlPGPDE------------------------DEHV 55  dog
XP_003221172  77 LAPPclqaPHGPGQCLVWACKTCKRKSAPTD 107 green anole
4_pfamImport  56 RAPGg---LHQAGRCLLWACKADKRKTTHAD 83 
XP_007228165  57 RAPSg---HHQAGRCLLWACKACKRKTTNAD 84  Mexican tetra
XP_005814488 141 RVPSg---HHQAGRCLLWACKACKRKTTNAD 168 southern platyfish
XP_005449194  82 RAPSg---HHQAGRCLLWACKACKRKTTNAD 109 Nile tilapia
XP_003214790  74 RAPSg---HHAAWRCLLWACKACKRKTTNAD 101 green anole
P16075        73 RAPSg---HHQAGRCLLWACKACKRKTTNAD 100 chicken
EOB07757      55 RAPSg---HHQAGHCLMWACKACKRKSTTMD 82  mallard
Q8QG50        56 RAPIg---HHQAGNCLMWACKACKRKSSTMD 83  tropical clawed frog
XP_852162     56 RAPTg---HHQAGHCLLWACKACKRKSTTTD 83  dog
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