6AGG,1GM5,5GRO,7AP4,5W25,5ZG8,1EOV,1WYD,3NEN,2PI2,2MNA,3DM3


Conserved Protein Domain Family
tRNA_anti-codon

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pfam01336: tRNA_anti-codon 
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OB-fold nucleic acid binding domain
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Statistics
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PSSM-Id: 460164
Aligned: 540 rows
Threshold Bit Score: 28.7399
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6AGG_Z 267 YRLRGRVTLEPy-------DIEgghvFFEIDTKF-GSVKCAAFEptKQFRNVIRLLRKGDVVEVY-GSMKKD-------- 329 Archaeoglobus fulgidu...
Q8SR55 227 WAIKGRVVMKSdirrftnqKGEgkvfNFEVSDGT-AQVKIICFS--DCVDIFFPIVEVGKVYTIAkGTVKMAnk------ 297 Encephalitozoon cuniculi
Q9FME0 194 WTIKVRVTNKGvmrnyknaRGEgcvfNVELTDEEgTQIQATMFN--DAARKFFDRFQLGKVYYISrGSLKLAnkqfkt-- 269 thale cress
Q10Q08 199 wIIKVRVTSKGnlrtyknaRGEgcvfNVELTDVDgTQIQATMFN--EAAKKFYPMFELGKVYYISkGSLRVAnk------ 270 Japanese rice
Q7PXI6 189 WVIKARVMSKSgirtwsnaKGEgklfSMDVMDES-GEIRITAFK--EQCDRYYDMIEVDKVYFISkCQLKPAnkqyts-- 263 Anopheles gambiae str...
Q7TP21 184 WTICARVTNKSqirtwsnsRGEgklfSIELVDES-GEIRATAFN--EQVDKFFPLIEVNKVYYFSkGTLKIAnkqfsa-- 258 Norway rat
Q9GYL8  18 FIIYGQISFI---------KSVrnasIFKVTDSDrDTIKCVAFG--ATGDWCNKELKLKQFCYVLgGKVQPIdk------ 80  Caenorhabditis elegans
O97472 236 FRIHGMVSRKEdik--nipAKNmkifNFEITDSNgDTIRCTAFN--ETAESFHSTITENLSYYLS-GGSVRQankkfnnt 310 Caenorhabditis briggsae
Q9GYL9 133 FKIHGRVTLMDd------kRRPekvfSFEITDVNgYTIRCVAFG--ELGVRLYGSIAKDQSYYLT-GGKVKNghtlyn-- 201 Caenorhabditis elegans
Q9GYL8 127 FKIHGRVTLMDtr----ppHHYqkrfNFEITDFNgDTIACSASS--PEADVFYQNLVKEQSYYLAgGHIKKGheiynq-- 198 Caenorhabditis elegans
6AGG_Z 330 ------TINLEKIQIV 339 Archaeoglobus fulgidus DSM 4304
Q8SR55 298 ----qySTNPFDYEII 309 Encephalitozoon cuniculi
Q9FME0 270 -vqndyEMTLNENSEV 284 thale cress
Q10Q08 271 ----qfKTVHNDYEMt 282 Japanese rice
Q7PXI6 264 -lkndyEMTMTNDTIV 278 Anopheles gambiae str. PEST
Q7TP21 259 -vkndyEMTFNNETSV 273 Norway rat
Q9GYL8  81 ----nyNIYPNDEFEI 92  Caenorhabditis elegans
O97472 311 ghdyeiTLRNDSVVEA 326 Caenorhabditis briggsae
Q9GYL9 202 qtghafEIILDEFPTI 217 Caenorhabditis elegans
Q9GYL8 199 -tgidyQIDLNNFTIM 213 Caenorhabditis elegans
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