1JCU,1HRU


Conserved Protein Domain Family
Sua5_yciO_yrdC

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pfam01300: Sua5_yciO_yrdC 
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Telomere recombination
This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
Statistics
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PSSM-Id: 426190
Aligned: 109 rows
Threshold Bit Score: 132.241
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JCU_A             21 SVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSpHKPVSICVSCVDEIPRFS---RPSGDAMELMERilpgPYT 97  Methanothe...
jgi:Cthe_3016     214 NIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGRE-AKPFAIMFESVDSIRKYCvvsEKEEELLKSKAR----PIV 288 Hungateicl...
O24889            219 kdIQKGKIIALKGLGGFALLCDGRNFQTIERLRLLKNRP-LKPFALMFKDLNTAKQHAflnALECESLISTSA----PIL 293 Helicobact...
Q7VJB7            216 QKIKAGKIVAIKGVGGFNLVANASNVQVIKTLRNRKNRP-HKPFAVMFKNLQDISSVAhinEEEKRALLSPQA----PIV 290 Helicobact...
jgi:HY04AAS1_0046 207 KDLKDSKIIALKGLGGFHLICNALDEKAVRTLRERKKRS-SKPFGIMFKSLEEVLKYLepkEDEIKALTSVQK----PIV 281 Hydrogenob...
Q0PAP5            209 kFLKEGKILAIKGIGGFHLMCDAFNEEALKTLRLRKNRP-KKPFALMCKDLQSAKELAfidEKEEALLGGVLA----PIV 283 Campylobac...
Q7M9N8            168 KLIKKGHIVAVKGIGGFHLVCDATKNRVVMELRERKKRP-TKPFAVMFRSVFEIGKCTelsPIEEATILSPER----PIV 242 Wolinella ...
Q31DZ8            222 QRLKTSGLVAFKGVGGFHLLCDATDSETVTRLRQKKHRA-TKPLAVLCANLEMAQQLAhlaPHEIELLTSEVK----PIV 296 Hydrogenov...
1_pfamImport        1 SALQAGALIAVKGMGGYHLVCDARNKQSVARLRTLKRRE-RKPLAVMMGSLAEAKLHVtgcEAEWQLLASQAR----PIT 75 
Q081W1            218 EMINRGGIVAIKGLGGFHLVCDATNNDAVAALRQRKQRL-AKPLAIMVTNLAQAKLCVsgtETEWQVLTSPEK----PIT 292 Shewanella...
1JCU_A             98 VVLE-------------------RNelIPD--VItGGSSRVGIRVPDDEICRRIAARFp--VTATSANISGKPPSPRLEE 154 Methanothe...
jgi:Cthe_3016     289 LLYLk------------------NNs-MAP--SAcQGSIYCGAFLPYTPLHMLLVKrc-gpLIMTSANISDKPIIKDDSE 346 Hungateicl...
O24889            294 LARKk-----------------pDIk-LAP--NIaKNSPFYGVILPYTPLHALLLDLLdfpIVFTSANFSSLPLASDEAE 353 Helicobact...
Q7VJB7            291 LLERhfks-----------egiiNEe-CFN--LIaPQIQSVGAILPYNGIMHLLFTLldmpLIFTSANLSGEPIITHAQE 356 Helicobact...
jgi:HY04AAS1_0046 282 LIKRk-------------------Sp-YFE--EAcKGLSSVGAFLAYTGIHLRLFDFidfpIIATSGNISDTPICKDNDK 339 Hydrogenob...
Q0PAP5            284 ILKAk-------------------K--AFS--LIaPDVDKIGIMLAYTPLHLLLFEYFkgsLVATSANLSGESIIKDEFN 340 Campylobac...
Q7M9N8            243 LISKrrp-------------hrlEKf-LIScdGVaPRVGTMGVFLPYSPLHSLLMEQakipLVFTSANLSGEPLIRDFKE 308 Wolinella ...
Q31DZ8            297 LVEKr-----------------sDTa-LCD--AIaPNINQLGVFLAYTPLHHLLFQYidfpLVATSANLSGEPILYEVSR 356 Hydrogenov...
1_pfamImport       76 LLRKrknddrp------sksqltTAp-LAE--GIaPGIPYLGVMLPYTPLHQLLLDAcaipLVATSANGRGSPILIECEA 146
Q081W1            293 LMTKrvasvdgkdngrdncgnihPIa-LSP--LLaPGIDRLGVFLPYTPLHHLLMQRlhkpIVATSANRSGEPIIANQAE 369 Shewanella...
1JCU_A            155 IVRDL-----DAVDLVLDAGd-CLDMEPSTVIDLTVNPPRVLRRG 193 Methanothermobacter thermautotrophicus
jgi:Cthe_3016     347 MLSLKs----PLLNGVLYNKrrIVRSVDDSVAKVVANSPQLIRRS 387 Hungateiclostridium thermocellum ATCC 27405
O24889            354 I-DALs----FIFDFKLTHNraIIHRIDDSIVQHVDNAIRPMRLa 393 Helicobacter pylori
Q7VJB7            357 LRQKLgg-anAVYDVMLDYNrdICNPIDDSIVRFMAGKMRILRLA 400 Helicobacter hepaticus
jgi:HY04AAS1_0046 340 AKSKLk----DIADGFFMHNrdIKRPIDDSVIKLIDNDVSIIRLA 380 Hydrogenobaculum sp. Y04AAS1
Q0PAP5            341 LCKKLd----KVFDFYLDYDreIINASDDSIAQVVNGETMFLRTs 381 Campylobacter jejuni
Q7M9N8            309 LCEKLs----GVFDYYLDHDreILNPCDDSVVTIQNNKFQVIRRA 349 Wolinella succinogenes
Q31DZ8            357 VFEKLchpdrALVEAVLDFDreIVNPSDDSIVQSINGKPMILRLG 401 Hydrogenovibrio crunogenus XCL-2
1_pfamImport      147 VIRELg----SEIDGILDHNrpILHPCDDSLVQWAGRRRQTLRLA 187
Q081W1            370 IEQHLs----HVVDGILGHNrpIINACDDSVVQVIDGQLQVIRLA 410 Shewanella frigidimarina NCIMB 400
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