1I3Q


Conserved Protein Domain Family
RNA_pol_L

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pfam01193: RNA_pol_L 
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RNA polymerase Rpb3/Rpb11 dimerization domain
The two eukaryotic subunits Rpb3 and Rpb11 dimerize to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerization domain of the alpha subunit/Rpb3 is interrupted by an insert domain (pfam01000). Some of the alpha subunits also contain iron-sulphur binding domains (pfam00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Statistics
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PSSM-Id: 426113
Aligned: 383 rows
Threshold Bit Score: 71.277
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1I3Q_C          20 FILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLadefiahrlgliplqsmdieqleysrdcfcedhcdkcsvvl 99  baker's yeast
WP_004076750    15 ILFVGEGHTFMNALSDEIL-KDPQVDVANYSSRF---------------------------------------------- 47  Methanoplanus...
WP_011972914    16 VELIHDDHSLSNLLKDMLLDKKDKVVMASYALEHPVLDP----------------------------------------- 54  Methanococcus...
Q6M0K9          16 LELVNDDHSLSNLVKEILL-AKDGVILASYGVEHPVLDP----------------------------------------- 53  Methanococcus...
WP_013181083    14 FELTNEDHSLPNILKDILL-SKENVIMASYNVEHPVLDP----------------------------------------- 51  Methanococcus...
jgi:Pyrfu_0179  16 VRLRGEDHTMANLIVKLAI-RKPHVTYAAYRIDHP--------------------------------------------- 49  Pyrolobus fum...
Q0W8P1          15 VEIKGESHTMMNALKSCLL-EDKAVKVATYDIEFP--------------------------------------------- 48  Methanocella ...
Q9HR53          15 IEVAGENHTFMNVLKGTLL-ETDGVTAASYDMNPEQ-------------------------------------------- 49  Halobacterium...
CCQ32522        15 IEISGEDHTFMNVLKGALL-ETDGVAAATYDMNPEQ-------------------------------------------- 49  Halorhabdus t...
jgi:Metev_1357  15 MEIQGEDHTLLNVLKSILL-EDSRVEIASYDMKHV--------------------------------------------- 48  Methanohalobi...
1I3Q_C         100 tlqafgesesttnvyskdlvivsnlmgrnighpiiqdkegngvlicklrkgqelkltcvakkgiakehakwgpaaaiefe 179 baker's yeast
WP_004076750       --------------------------------------------------------------------------------     Methanoplanus...
WP_011972914       --------------------------------------------------------------------------------     Methanococcus...
Q6M0K9             --------------------------------------------------------------------------------     Methanococcus...
WP_013181083       --------------------------------------------------------------------------------     Methanococcus...
jgi:Pyrfu_0179     --------------------------------------------------------------------------------     Pyrolobus fum...
Q0W8P1             --------------------------------------------------------------------------------     Methanocella ...
Q9HR53             --------------------------------------------------------------------------------     Halobacterium...
CCQ32522           --------------------------------------------------------------------------------     Halorhabdus t...
jgi:Metev_1357     --------------------------------------------------------------------------------     Methanohalobi...
1I3Q_C         180 ydpwnklkhtdywyeqdsakewpqsknceyedpPNEGDPFDYKaqadtFYMNVEsvGSIPVDQVVVRGIDTLQKK 254 baker's yeast
WP_004076750    48 -------------------------------------KFTDPI-----LTVTVK--EGGDPVGAVLKAAGKISEN 78  Methanoplanus limi...
WP_011972914    55 ---------------------------------ETDLHISNPI-----LILKTT--EGVNAEEVLKEALKEIIDL 89  Methanococcus aeol...
Q6M0K9          54 ---------------------------------DTGRYISNPT-----IMLKTD--EKTDAETVLKEALKDIVDL 88  Methanococcus mari...
WP_013181083    52 ---------------------------------ESGKYISNPL-----LVLETV--EGTNAVEILKESLSDLIAL 86  Methanococcus voltae
jgi:Pyrfu_0179  50 -------------------------------------LVDDPV-----VVIATD--GTVSPIDVLENVLNEIVKL 80  Pyrolobus fumarii 1A
Q0W8P1          49 -------------------------------------GISDPV-----LYVRTD--KSEDPIDAIKVAAKKLADE 79  Methanocella arvor...
Q9HR53          50 -----------------------------------SGGQTEPL-----LTIKTD--GDVDPVDALQAAAGHTSQK 82  Halobacterium sali...
CCQ32522        50 -----------------------------------SGGQTDPI-----LTIKTE--SGTDALDALEAGAQHVIEK 82  Halorhabdus tiamat...
jgi:Metev_1357  49 -------------------------------------NVSEPI-----LYVKTD---GTDQITVIKEALSKLISR 78  Methanohalobium ev...
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