4WD8


Conserved Protein Domain Family
Bestrophin

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pfam01062: Bestrophin 
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Bestrophin, RFP-TM, chloride channel
Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localized to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members.
Statistics
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PSSM-Id: 426024
Aligned: 153 rows
Threshold Bit Score: 160.443
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4WD8_A              4 MIIRP-EQHWFLRLFDWHGSVLSKIIFRLLLNVLMSIIAIISYQWYeqlgih--ltvapFSLLGIAIAIFLGFRNSASYS 80  Klebsiella...
CAZ83819           21 kslRQkPRKWPLVFRFIKGAIHYVILIPVLFHTLFTIAVLLVHRLVdvdla---lpssiVPSLSIVVGLMLVFRNSSSYE 97  Perigord t...
XP_016763164       24 ysTRQkPRRWPLVLRFIKGAIHLDIAIPVCLHALFAAAVCYVDSVRegnls---ipsatVPSLSIVVGLMLVFRNSTSYD 100 Sphaerulin...
XP_007923367       27 hsmRKkPRRWPLVIRFVKGAIHADIALPVMLHAAFTALICYLDYSLqghlg---ipsatIPSLSIVVGLMLVFRNSTSYD 103 Pseudocerc...
jgi:Cyan7425_0608   6 VLSTAaKQSWLRLALQLQGSVFPIVLPRILMFSGLGMLVALAHdfhlpvyiqalgdlsnnvacNLVLGLLLVFRTNTAYE 85  Cyanothece...
Q8YSU5              1 -MTVAk-KHWFQIAFQLRGSVIGAIYKRVICCALFGVLVTLLYQLKipvsqpi----lgsvipSIVLGLLLVFRTNTAYD 74  Nostoc sp....
P72926              7 HPSRSp-RIWTDILLRWQGSVIPAIASRVLVCMAFSLGVTLVDGWGykfsipi----qesivpSIVLGLLLVFRTNTAYE 81  Synechocys...
jgi:PCC8801_0221    7 yqDKSeGRNWFRLVYQWRGSVMKAILPRVLVCAIFSLGVTVFYQCGvnlalpl----esgivpSIVLGLLLVFRTNTAYE 82  Rippkaea o...
WP_015955116        6 FSDRQq-RLWFRLLFEWRGSVIPAILPKILFCGMFSIIIIVIDISGynlslpl----esgivpSLVLGLLLVFRTNTAYD 80  Gloeothece...
jgi:Mic7113_5672    7 tSKKSaKNFWIKKTFSLKGSVILGVLERSFLCGAFGILISFLYLKKipvaqpi----lgnvipSIVLALLLVFRTNTAYE 82  Microcoleu...
4WD8_A             81 RFVEARNLWGTVLIAERTLVRQLRN-I------L-PAEHDAHRRIVSY----LVAFSWSLKHQLRKT------------- 135 Klebsiella...
CAZ83819           98 RYWGGRTALQQIVNNLRNLVRTFLVcGpl---sD--DSDRVETERTvk---tLVAMLYAVKNHLRGNwe----------- 158 Perigord t...
XP_016763164      101 RFWQGNQLFTTVETSIRNLVRSFLAcSykasgpPpTEAERADTERTvr---lLLAMIFAAKNSLRAEwgqeipllvpqte 177 Sphaerulin...
XP_007923367      104 RFWQGNQLFTTLETNIRNLTRSFLAcSyktggpPpTPAQRADTERTvr---lLLALIFAAKNHLRAEwgqtiplllprte 180 Pseudocerc...
jgi:Cyan7425_0608  86 KFWEGRKAWGELVVNIRNLSREIRCsL------P--AESEQDRQTQETliklLTAFAIATKLHLRQL------------- 144 Cyanothece...
Q8YSU5             75 RFWEGRKAWGSIVNNTRNLARQIWVsV------E--EVSLKDREAKISvlnlLVAFAVATKLHLRGE------------- 133 Nostoc sp....
P72926             82 RFWEGRKAWGTMVNTIRNLSRIIWVsV------A--EPSPQAHQDKIKilhlLVAFAVATKLHLRSQ------------- 140 Synechocys...
jgi:PCC8801_0221   83 RFWEGRKLWGTLINTVRNLARTIWVtV------E--ENEAQDRQEKIVtlrlLVAFSVATKLHLRGY------------- 141 Rippkaea o...
WP_015955116       81 RFWEGRKAWGTLINTVRNLARTIWVsI------E--EHKPEDRNEKTAtlrlLVAFAIATKLHLRSE------------- 139 Gloeothece...
jgi:Mic7113_5672   83 RFWEGRKLWGSTVSTIRNLVWQIWIaV------D--EVEQGDRESKITtlrlLSAFAISKKLYLRYE------------- 141 Microcoleu...
4WD8_A            136 ----------DPTADlrRLLP--EERVTEILasSMPTNRILLLaGnEigqlrEAGKLSDItY-GLMDNKLDELAHVLGGC 202 Klebsiella...
CAZ83819          159 --------asALQPEfaSLMPe--gFRGHEAegVGLPMELAFVvErYikrgvKKGAFNAP-QsANLNASLNAVIMAYGNM 227 Perigord t...
XP_016763164      178 vdrrrresvsVYKAEydELLPp--gTKGHEEagLALLLQLSFQvEsYikrahDRGWFHSP-QaSQLTVQLNTLVAAYGSM 254 Sphaerulin...
XP_007923367      181 vervrresvsVYKAEydQLLPp--gTRGHEEqgLGLVLQLSVQiEgYikrahDLGWFHSP-QaSQMTVQLNTLVAAYGSM 257 Pseudocerc...
jgi:Cyan7425_0608 145 ----------PIEQEldELVSpdQLPQ--LQqsANPPLLISLAiEaYlqqqyQHQNLEVN-QrIAMGERVNQLIAGLTSC 211 Cyanothece...
Q8YSU5            134 ----------PINSEleDLIStsRYFK--LKsmNNPPLEVAFWiGdYlqqqyTCKCLNSY-QlTSIQELLNNLVDNLGSC 200 Nostoc sp....
P72926            141 ----------PLNEEiwALLPesGYRK--LEdlNNPPLEIAFWiSnYlqreyDQNNINAY-QlTAMLRLVDTMVDVLGSC 207 Synechocys...
jgi:PCC8801_0221  142 ----------TNYDEliDLMPnlWHEK--LKsmNNPPLEIAFWiGdYlqeqyEKGCINPY-QlTAMFKLLDIMVDVLGGC 208 Rippkaea o...
WP_015955116      140 ----------PVNEElvPFMPygCYEN--LKnmNNPPLEVAFWiGdYlqrqnDKGSLNAY-QlTSMFKLLDSLVDVLGIC 206 Gloeothece...
jgi:Mic7113_5672  142 ----------PASEElqPWVSpsQYGI--LQntPNMPLEIIRWiAdElhqkyKRGLLTVS-QlGDIQSLMNKLIDNVGGC 208 Microcoleu...
4WD8_A            203 ERLATTPVPFAYTLILQRTVYLFCTLLPFALVGdlhymtpfvsvfIsYTFLSWDSLAEELEDPFGTAANDLPLNAMcntI 282 Klebsiella...
CAZ83819          228 ETIKLTPIPVCQQIHQKQVLALYCCVLPFCLLDdmgwwtipvitlVcFTLYGIEGIGEELEDPFGNDRNDIKIDAIiedc 307 Perigord t...
XP_016763164      255 ETIHLTPLPVAYLIHTRQVLALFCMVLPFALVQemgwwsiflvtiTsFTLYGIEAIGAQLEDPFGYDRNDIKVDAIvedl 334 Sphaerulin...
XP_007923367      258 ETIHLTPLPVAYLIHMRQVCALFCCVLPFALVKemgwwsilmvsfIaFTLYGIEAIGAQLEDPFGYDRADIKLDAIaedL 337 Pseudocerc...
jgi:Cyan7425_0608 212 ERIARTPIPPAYTIYLKRLILIYCCFLPFNLVErtqtwtglimavVsFILFGVEEIGNQIENPFGTDPNDLPLDQIcqvI 291 Cyanothece...
Q8YSU5            201 ERILRTPMPLAYSIHLKQLLLLYCFLLPFQMVEslgwwtglvvglVsFTLFGIEAIGLEIENPFGYDPNDLPLDAIcntM 280 Nostoc sp....
P72926            208 ERILKTPIPLAYAIHLRQLIFLYCFITPFQIVNtlhwatafvvgiIaFTVFGIEEIGVEIENPFGHDANDLPLDQIcqtM 287 Synechocys...
jgi:PCC8801_0221  209 ERILKTPIPLAYSIHLKQLVFIYCFTLPFQVVDelrwltsplvslIsFTVFGIEEIGEEIEDPFGYDANDLPLDKIcqtM 288 Rippkaea o...
WP_015955116      207 ERILKTPIPLAYNIHLKQLILLYCCTLPFQLVDqfrwltpllvclIsFTVFGIEEIGIEIENPFGDDPNDLPLDQIcqtM 286 Gloeothece...
jgi:Mic7113_5672  209 ERILKTPIPPAYVIHLNQLVLIYCLILPFQFVKdlgwwtglfvtiVsFALFGIEEIGVEIENPFGYDMNDLPLDGIcqlI 288 Microcoleu...
4WD8_A            283 ERNLL 287 Klebsiella pneumoniae UHKPC96
CAZ83819          308 rqevm 312 Perigord truffle
XP_016763164      335 rvetm 339 Sphaerulina musiva SO2202
XP_007923367      338 rvetl 342 Pseudocercospora fijiensis CIRAD86
jgi:Cyan7425_0608 292 VENgn 296 Cyanothece sp. PCC 7425
Q8YSU5            281 KRNID 285 Nostoc sp. PCC 7120 = FACHB-418
P72926            288 QANLE 292 Synechocystis sp. PCC 6803 substr. Kazusa
jgi:PCC8801_0221  289 KINIE 293 Rippkaea orientalis PCC 8801
WP_015955116      287 KRNIE 291 Gloeothece citriformis
jgi:Mic7113_5672  289 QNNIE 293 Microcoleus sp. PCC 7113
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