6LQS


Conserved Protein Domain Family
RNB

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pfam00773: RNB 
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RNB domain
This domain is the catalytic domain of ribonuclease II.
Statistics
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PSSM-Id: 425862
Aligned: 55 rows
Threshold Bit Score: 175.163
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6LQS_R4  531 RKDLRDKLICSIDPPGCVDI-----DDALHAKKLpn-gnWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDML 604 
O74454   614 QHE------SNINSSSATDFv----SSAFHIRPTst--gYHVGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLF 681  Schizosaccharomyce...
P24276   692 FTDTNEYNIFAISELGWVS------EFALHVRnng-ngtLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLL 764  Saccharomyces cere...
Q46363   245 RTWITAKLQLVTFGDGPRGEtlpwqEVALSLEsqa--nqWQVGIHITDIAHYIAEDSLLDQLARKRGTTVYLEEQICPLF 322  Synechocystis sp. ...
Q8YXH3   245 klDLRNLFTFTITGINSDTKv---iENAISLEKTia-gnWQLGFHIADVSHYVQPDEPLDREAIKRGRSVYLGDLVLSML 320  Nostoc sp. PCC 7120
Q2JH83   252 RRDLRDWFCITLEPLDLQHPhglepNVAVSLQRQen-dhWLLGIHIADVAHWLDPDHPLEQEAQQRTATVYLDTMVLPLF 330  Synechococcus sp. ...
Q8DHS2   247 RQDLRELVTITLVAPGQEP------QVAFSLDGLgp-dlWQLGIHISDVGGLLPRDELLDRTARRQGMSLATPELSLPLL 319  Synechococcus elon...
Q31LX8   247 RLDLRSVFTVAIAADDSRPL-----DVALSLQPGes-ggWQVMVHTVEVAPYLPLQSDLDLEAQRHGIDLRLGETALPFL 320  Synechococcus elon...
Q7V7I0   239 RQDLSSQPALLLRSWQVSDAp---pLPAVYVE-Pha-ggTRLWIHAPAVAERLTIGNNLDLWLRDRAEALCLGEVWHPLL 313  Prochlorococcus ma...
Q7VBV4   238 RNNLESQPCILFKSWSSKNCp---lLPALY--SEpsnggMTLWIHIPTIGERLNYGSKLDEWIRNRSNSICFGEEWQCFL 312  Prochlorococcus ma...
6LQS_R4  605 PMLLGTDLCSLKPYVDRFAFSVIWELDDS-ANIVNVNFMKSVIRSREAFSYEQAQLRIDdKTQNDE----------LTMG 673 
O74454   682 PTTLGEAL-SLREDKDCYTMSLLLDVSST-GKIRGTWIGWAVIRPRKAYTMKEADELLQ-----------------TDAR 742  Schizosaccharomyce...
P24276   765 PQSFNDEL-SLAPGKESATLSVVYTLDSStLRIKSTWVGESTISPSNILSLEQLDEKLStGS--------------PTSY 829  Saccharomyces cere...
Q46363   323 PEGLIGR-CSLIPDEDRLALSFFLTVDDR-GEVTGFEYHSSVVKVDHQLDFSEVQTALAdIES-------------VSGE 387  Synechocystis sp. ...
Q8YXH3   321 PDTVADRA-SFVTGSDRLALSFLITISSQlGEVLEWEIQPSVINVDNNVSKQQAEAILQgAATKKDsp-------qIIER 392  Nostoc sp. PCC 7120
Q2JH83   331 PPEVHNRL-ALLPQQERLAYSLLVTLDPE-GVVQNFEIYPSLVQSRAHLSYGQVQALLAtTADLGPdee----vpeLMAL 404  Synechococcus sp. ...
Q8DHS2   320 PQELET--LRLLPGGDRAAISLLIVLNTA-GEVQSYRIYRSCIRVDACVTSEQVAATLAlGDS-------------SGDW 383  Synechococcus elon...
Q31LX8   321 PPVLTQGVGRFAVGEDRRAVSLLIRVDAT-GAVQDYELQPSLVQLDQVLSPAEATDLLAdSKAKGE----------GIKA 389  Synechococcus elon...
Q7V7I0   314 GQILSKA-CSFKVGEINDAVSVALDISAD-GEVTNWHFSLSSIKPVAEIGPKTLTALSNrKPKARTvpaalkpvkdHLAQ 391  Prochlorococcus ma...
Q7VBV4   313 GDKLNKE-AGFEIGKSNSAITLELFIDKN-GKCQSWEFYLSTIKPVAKVSQKNLDDILKrKKRSRIvpaslkllkdYINN 390  Prochlorococcus ma...
6LQS_R4  674 MRA----LLKLSVKL----K----------------QKRLEA-GALNL-ASPEVKVHM----DsetsdpneVEI------ 717 
O74454   743 LRL----FHTVSSRL----RthhlgtdvplsrycrlVRRWDE-ESCSFdPNETNLFIS---------------------- 791  Schizosaccharomyce...
P24276   830 LST----VQEIARSF----Y----------------ARRINDpEATLL-PTLSLLESLddek-----vkvdLNI------ 873  Saccharomyces cere...
Q46363   388 LKPygglLQELFFQIcpliK----------------SQRLQR-GSFNL-QTETASPRL----Degr--lgvIMT------ 437  Synechocystis sp. ...
Q8YXH3   393 LQN----LTTIGQAI----K----------------ESRLAR-GSLQLnLPSNQNPYY----Degs--lgaVLVn----- 436  Nostoc sp. PCC 7120
Q2JH83   405 LQN----LLRLSQIL----R----------------AKRHQA-GGFDL---PLLDLLTphsaDesg--ygpLLI------ 448  Synechococcus sp. ...
Q8DHS2   384 LRA----LIHLANAV---------------------SQRRQArGSIEV--TPAEALRLayadE----------------- 419  Synechococcus elon...
Q31LX8   390 LKE----LQTIADLW----R----------------TQRRER-GGFELtVTPAIGN------Dega--lgvI-------- 428  Synechococcus elon...
Q7V7I0   392 LET----LIFCARTL---------------------QMGEQAsGSIELdlav---------------pelqCLGdlrwad 431  Prochlorococcus ma...
Q7VBV4   391 IED----LLYISKII---------------------NENLIKaGLIQLdlpv---------------pvieNLEdldktv 430  Prochlorococcus ma...
6LQS_R4  718 -----------KKLLATNSLV-------EEFMLLANISVARKI-YdAFPQTAMLRRHAAPPSTNFEILNEMLntrknm-- 776 
O74454   792 --------------SAVEVLR-------ETLLDAANRAVASHLrQ-EFRENAFLRTQRLPSRENCRILQSMA-------- 841  Schizosaccharomyce...
P24276   874 -----------LDRTLGFVVI-------NEIKRKVNSTVAEKIyT-KLGDLALLRRQMQPIATKMASFRKKI-------- 926  Saccharomyces cere...
Q46363   438 -----------QETLPIRSLL-------AELMVVLQREVALQL-Q-ALGIPGLYCGQVAPEGEDLTDIVKLAgnldlgvk 497  Synechocystis sp. ...
Q8YXH3   437 -----------D--SPVRSLL-------MELVLLVNELIATHL-S-ALGIPAIWRTQGTPDSEDVQEMLKLAinlgvela 494  Nostoc sp. PCC 7120
Q2JH83   449 -----------SDRLGAHALM-------TEILLLANQILGHHL-R-QLGIPSLARVQPAPAAEALQSFLRLAnamkldln 508  Synechococcus sp. ...
Q8DHS2   420 --------------GLAPAIFlpkvtpwTSLVILANELLGRHL-A-KLGVPALYRTQPVPELYGVQDFLKLCqnlnlpls 483  Synechococcus elon...
Q31LX8   429 -----------SRSPAIAGAV-------QEILIQANRLVTEHL-Q-ALELPVLYVGQRSPDLGSIQDAQRLAaglglaie 488  Synechococcus elon...
Q7V7I0   432 pdsyhhqwalpLDQTDPQSVL-------SPMIRAAHRAWAQHA-Q-NLQLPGLVIEASEADNNTLNDVAKSAl------- 495  Prochlorococcus ma...
Q7VBV4   431 pggefngwsdtYKDKDPQSII-------SVFTKYANIILKDHF-I-SYNISFIALKFKQPDNIQLNDVIKSAl------- 494  Prochlorococcus ma...
6LQS_R4  777 ------sisleSSKAL----------ADSLDRCVD----P--EDpyfntLVRIMSTRCMMAAQyfysgaY------SYPD 828 
O74454   842 -----------IQMGCvldlsstkslLRSLSLIED----DtvRN-----ILQLYYYKVTPRAV------Y------EMQK 889  Schizosaccharomyce...
P24276   927 -----------QNFGYnfdtntadelIKGVLKIKD----DdvRV-----GIEILLFKTMPRAR------YfiagkvDPDQ 980  Saccharomyces cere...
Q46363   498 i-dlegdiipqHYHHL----------SQGFESLPA-------KA-----VLNHLLANTLKIEK------Y------FSHP 542  Synechocystis sp. ...
Q8YXH3   495 l-epevdieplDYQQL----------TRAFAESPS-------EQ-----VLTYLLQDTLKPAV------Y------STTK 539  Nostoc sp. PCC 7120
Q2JH83   509 l-qdpavvtlaDWQRI----------CARITAPDVlasgAs-PA-----LVAQMLA-TLPPVE------Yrl--qpLEEQ 562  Synechococcus sp. ...
Q8DHS2   484 l-dhpsqvtprDYQRF----------MAQLATSDL-------AA-----LLQELLLDKLKPAS------D------SPVV 528  Synechococcus elon...
Q31LX8   489 vdenetelnrlALQQL----------SDATQTSEL-------AS-----LLDHLLLQTFKPSF------Y------STLA 534  Synechococcus elon...
Q7V7I0   496 ----------aLDIALeldeegrpaaTELAKAFST----TacRR-----VLDQQLRHALPETL------L---------- 540  Prochlorococcus ma...
Q7VBV4   495 ----------vLDTKInvneegiisfKDLILSLKE----SpnKR-----LIEKIISNTILDKY------Y------SIPT 543  Prochlorococcus ma...
6LQS_R4  829 FR------HYGLAVDI----------------------YTHFTSPIRRYCDVVAHRQLAGAI 862 
O74454   890 YKgnlasqMMSLGIEDes------------------ddLTHFTAPLERYGDIVVHYQLQLLL 933  Schizosaccharomyces pombe 972h-
P24276   981 YG------HYALNLPI----------------------YTHFTAPMRRYADHVVHRQLKAVI 1014 Saccharomyces cerevisiae S288C
Q46363   543 AP------HFALAYDSg---------------------YTHCVSPAQRYGDLVIQRLLKLVL 577  Synechocystis sp. PCC 6803 substr. K...
Q8YXH3   540 AS------HFGLALLQ----------------------YTHFTAPLRRYPDLLMQRVYYQLL 573  Nostoc sp. PCC 7120
Q2JH83   563 LG------HFGLGLKEp---------------------YATFTAPLRRYADLLNLRALHLAL 597  Synechococcus sp. JA-2-3B'a(2-13)
Q8DHS2   529 LT------HFGLATAEg---------------------YGHFCSPLQRYTDIVNQRILHLLL 563  Synechococcus elongatus
Q31LX8   535 VP------HFSLGLET----------------------YGHFVAPSQRYADLWLQRVILALF 568  Synechococcus elongatus PCC 7942
Q7V7I0   541 ----------RLGINDsqkengniesdhedtktkdsnlQSPWCCPTIHYTDLVNQEIIVTLL 592  Prochlorococcus marinus str. MIT 9313
Q7VBV4   544 SN------SDDLGLSKedstnl-----------isadiEAPWSSPGMNYADVINQFILLKLL 588  Prochlorococcus marinus
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