1LUZ,2ID0,5IE8,2JA5


Conserved Protein Domain Family
S1

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pfam00575: S1 
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S1 RNA binding domain
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Statistics
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PSSM-Id: 425760
Aligned: 31 rows
Threshold Bit Score: 49.2079
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1LUZ_A    9 PNAGDVIKGRVYEKD-YALYIYLFd-YPHFEAILAESVKXHx-----------DRYVEYRDKLVGKTVKVKVIRVDYTKG 75   Vaccinia virus WR
P14129  456 LRKNAVVSAEVIGVNdGGIEVRLVnhEDVTAFIRRADLSRD------------RDEQRPERFSVGQTVDARVTNFSKKDR 523  Sinorhizobium melil...
Q31QE3  116 qTEDATVRSEVFATNrGGALVRIE---GLRGFIPGSHISTR----------------KAKEDLVGEELPLKFLEVDEDRN 176  Synechococcus elong...
P38494   99 FETKEVFEAEVKDVVkGGLVVDIG----VRGFIPASLVEA--------------HFVEDFTDYKGKTLSLLVVELDRDKN 160  Bacillus subtilis s...
P14129  108 FEAGERVEGIIFNQVkGGFTVDLD---GAVAFLPRSQVDIR--------------PIRDVTPLMHNPQPFEILKMDKRRG 170  Sinorhizobium melil...
P46836  120 KEKDEAVKGIVIEVVkGGLILDIG----LRGFLPASLVEMR--------------RVRDLQPYIGKEIEAKIIELDKNRN 181  Mycobacterium lepra...
P34703 1181 HMLGDSRQG-GCPGTpVGIRVRFD--NGMTGFCPNKNISSS------------HVDNPLTRVKINQPYYFKVLKLDKERF 1245 Caenorhabditis elegans
2JA5_G   81 PFKGEVVDGTVVSCSqHGFEVQVG---PMKVFVTKHLMPQDltfna--gsnppSYQSSEDVITIKSRIRVKIEGCISQVS 155  baker's yeast
P38421   79 PFKGEILEAVVTLVNkMGFFAEAG---PVQIFVSKHLIPDDmefqag-dmpnyTTSDGSVKIQKECEVRLKIIGTRVDAT 154  thale cress
P62489   79 PFKGEVVDAVVTQVNkVGLFTEIG---PMSCFISRHSIPSEmefdpnsnppcyKTMDEDIVIQQDDEIRLKIVGTRVDKN 155  Norway rat
1LUZ_A   76 YIDVNY 81   Vaccinia virus WR
P14129  524 KIQLSI 529  Sinorhizobium meliloti 1021
Q31QE3  177 RLVLSH 182  Synechococcus elongatus PCC 7942
P38494  161 RVILSH 166  Bacillus subtilis subsp. subtilis str. 168
P14129  171 NIVVSR 176  Sinorhizobium meliloti 1021
P46836  182 NVVLSR 187  Mycobacterium leprae TN
P34703 1246 SLFLSC 1251 Caenorhabditis elegans
2JA5_G  156 -SIHAI 160  baker's yeast
P38421  155 -AIFCV 159  thale cress
P62489  156 -DIFAI 160  Norway rat
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