2O8F


Conserved Protein Domain Family
MutS_V

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pfam00488: MutS_V 
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MutS domain V
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Statistics
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PSSM-Id: 425714
Aligned: 28 rows
Threshold Bit Score: 255.966
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2O8F_A  665 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSL 744  human
O13921  743 WLITGPNMAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILKNATRRSF 822  Schizosaccharomyces...
P40965  630 QIITGCNMSGKSVYLKQVALICIMAQMGSGIPALYGSFPVFKRLHARV-CNDSMELTSSNFGFEMKEMAYFLDDINTETL 708  Saccharomyces cerev...
O83348  622 ALITGPNMAGKSTFLRQTALICLIAQVGSFVPAEKAELTPVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDSL 701  Treponema pallidum ...
O74502 1020 IVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSL 1099 Schizosaccharomyces...
Q9SMV7  849 LLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSL 928  thale cress
P57504  613 IIITGPNMGGKSTYMRQIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHNATSNSL 692  Buchnera aphidicola...
O66652  603 HVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNILNNATEKSL 682  Aquifex aeolicus VF5
Q97I19  610 MLITGPNMAGKSTYMRQVGLIVLMAQIGCFVPASAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSHILKNATKNSL 689  Clostridium acetobu...
Q9ZDM9  642 WLITGPNMAGKSTYLRQNAIITIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSL 721  Rickettsia prowazek...
2O8F_A  745 IIIDELGRGTSTYDGFGLAWAISEYIA--TKIGAFCMFATHFHELTALANQIPTVN--NLHVTAL----------TTE-E 809  human
O13921  823 VIMDEIGRGTTASDGIAIAYGCLKYLS--TINHSRTLFATHAHQLTNLTKSFKNVEcyCTNLSID----------RDD-H 889  Schizosaccharomyces...
P40965  709 LILDELGRGSSIADGFCVSLAVTEHLL--R-TEATVFLSTHFQDIPKIMSKKPAVS--HLHMDAV----------LLNdN 773  Saccharomyces cerev...
O83348  702 VIMDEVGRGTATEDGLSIAQAVSEYLL--HHVRAKTLFATHYHELSRLAH--PQLE--HLKLDVL----------ETD-N 764  Treponema pallidum ...
O74502 1100 VILDELGRGTSTYDGHAIAYAVLHHLV--SNIGCLGFFSTHYQSLCVDFMHHRQVRlmQMAAAVD----------EKI-R 1166 Schizosaccharomyces...
Q9SMV7  929 VILDELGRGTSTFDGYAIAYSVFRHLV--EKVQCRMLFATHYHPLTKEFASHPRVT--SKHMACAfksrsdyqprGCD-Q 1003 thale cress
P57504  693 VLIDELGRGTSTNEGLSLAWSCSRYLI--NINKSMTLLSTHFVELTKLEEKEKFVK--NFHFSAI----------KSD-L 757  Buchnera aphidicola...
O66652  683 VILDEVGRGTSTYDGIAISKAIVKYIS--EKLKAKTLLATHFLEITELEGKIEGVK--NYHMEVE----------KTP-E 747  Aquifex aeolicus VF5
Q97I19  690 ILLDEVGRGTSTYDGLSIAWSVIEYICksENLKCKTLFATHYHELTKLEGEIEGLK--NYSIAVK----------KVN-D 756  Clostridium acetobu...
Q9ZDM9  722 IILDEVGRGTSTYDGVSIAWSVLEYIH--DKLQCRCLFATHYHELTVMKNFLPALQ--NYTIAIE----------ESG-K 786  Rickettsia prowazek...
2O8F_A  810 TLTMLYQV-KKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852  human
O13921  890 TFSFDYKL-KKGVNYQSHGLKVAEMAGIPKNVLLAAEEVLTLLP 932  Schizosaccharomyces pombe 972h-
P40965  774 SVKMNYQLtQKSVAIENSGIRVVKKIFNPD-IIAEAYNIHSLLK 816  Saccharomyces cerevisiae S288C
O83348  765 TIVFLKKV-TPGSCGSSYGIYVARLAGLPESVLARACELLKQLQ 807  Treponema pallidum subsp. pallidum str. Nichols
O74502 1167 RVTFLYKL-EDGICPKSYGMNVASMAGLPEKVIDAAEEKASELE 1209 Schizosaccharomyces pombe 972h-
Q9SMV7 1004 DLVFLYRL-TEGACPESYGLQVALMAGIPNQVVETASGAAQAMK 1046 thale cress
P57504  758 HIAFLYKI-KNGISKKSYGISVASLSGLPDSVLEDAEKKLIEIE 800  Buchnera aphidicola str. APS (Acyrthosiphon pisum)
O66652  748 GIRFLYIL-KEGKAEGSFGIEVAKLAGLPEEVVEEARKILRELE 790  Aquifex aeolicus VF5
Q97I19  757 DIIFLRKI-ISKGADESYGIEVAKIAGLPEEVLVRAREILKDLE 799  Clostridium acetobutylicum ATCC 824
Q9ZDM9  787 DILFLHNI-ILGASNKSYGLHVAALAGLPTSVINRAAQILLKFE 829  Rickettsia prowazekii str. Madrid E
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