Conserved Protein Domain Family
DNA_gyraseB

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pfam00204: DNA_gyraseB 
DNA gyrase B
This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to pfam01119.
Statistics
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PSSM-Id: 425522
Aligned: 48 rows
Threshold Bit Score: 105.775
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8G4F7        322 GVKDFVDFLSKGepisdiwriqgegtykeetqAVGEGGELhA----------QEIertCGVDIALRWVNgydT-TIMSFV 390  Bifidobacteri...
WP_003512494  230 GIVDYIKEVSGD--------------------KAFTDIQYyEtstrg-rdreDKPeykLKMQIAFCFNN---EvNLLEYY 285  Acetivibrio t...
CAG04396      305 GFRSYVDLYVKDkvde-------------mgnALNVVHEV-V----------NER---WEVCLTM---Se-kGfQQVSFV 353  spotted green...
EDO19464      246 NFKSYVELYLKSlekkk-----------ltesGESTEDLQtPtily---ekvNDR---WEVAFSS---Se-aSfQQVSFV 304  Vanderwaltozy...
XP_001828929  322 NFKQYVEMYVSSvqea-------------aaeKSGGAA---QpkqtviheqiSDR---WEIAYTL---StegTfQHVSFA 379  Coprinopsis c...
Q5FRH8        251 GLEDALSAELGP---------------------DPDLLTPiWagdve-lpiaADGrtgGRVEWAVAFLes-gTaSLSSFC 307  Gluconobacter...
Q1GFU3        251 GLRDYLTEVLGK---------------------SSVYADApFagkv---efrEKFgepGYVEWAINWTps-rDgFTQSYC 305  Ruegeria sp. ...
Q5NQG9        240 GLADYLKEEVGK---------------------RDCATKEfFtg------rqSFSdeeGSVEWAVAWPlw-sEgSSLYYC 291  Zymomonas mob...
Q2S2H3        221 GIQEYLDYLVED------------------------LQVSpIhddvf-mmedDDLdgdGRLEIALQWTda-pKeQLHTFV 274  Salinibacter ...
Q6AKW6        212 GLRDLLAKELSDsnl---------------yePIYYKDET--------------------LEFAFAHTDsfnD-SYYTFV 255  Desulfotalea ...
Q8G4F7        391 -NIVETPGGGTHVDGFMNAITKQIRKAVEDNaRKLKVNmKdsaMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQ 469  Bifidobacteri...
WP_003512494  286 hNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQ-GKYNKD-E---SRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKF 360  Acetivibrio t...
CAG04396      354 -NSIATTKGGRHVDYVADQVVSKLIEVVKKK-NK--AG-V----AVKPFQVKNHMWLFVNCLVENPTFDSQTKENMTLQQ 424  spotted green...
EDO19464      305 -NSIATTSGGTHVNYITDQIVKKVSEAIKKK-SK-----K----TVKPFQIKNNMFIFINSLIENPAFTSQTKEQLTTRV 373  Vanderwaltozy...
XP_001828929  380 -NSIATSKGGTHVNYIADQISKALVTSISKK-NK---G-A----TVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPS 449  Coprinopsis c...
Q5FRH8        308 -NTIPTPQGGTHEAGFRAALVKGLRAWGVQR-K-VKRA-A----AISAEDVLGSVAAKLSVFIRDPQFQGQTKDKLTSQE 379  Gluconobacter...
Q1GFU3        306 -NTVPTPEGGTHVAGFWSAILKGIKAYGELV-G-NKKA-G----QITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEA 377  Ruegeria sp. ...
Q5NQG9        292 -NTILTPAGGTHEQGLRLALVRGLRAFGELV-G-LKKA-K----DIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQ 363  Zymomonas mob...
Q2S2H3        275 -NGIPTEDGGTHEQGLKSGIRAVIRSFMDTH-DLVPHR-L----EIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPS 347  Salinibacter ...
Q6AKW6        256 -NGTYTSEGGTHLSAFREGVLKGVNEFSGK--------------KFVNTDVRDGIVGTLAVKVKEPVFESQTKNKLGNTE 320  Desulfotalea ...
Q8G4F7        470 VK--PIVTRLTDKQFGEMITGSKrgykEQSGRVLEKIVGEMHARIQSRKAKEV 520  Bifidobacterium longum
WP_003512494  361 IQ--EAMTEFLKEKLEVYFIENK----VECTKILEQVLVNKRSRETAEKTRVN 407  Acetivibrio thermocellus
CAG04396      425 KSfgSTCP--LSDKFIKQATA-S----GIVESIMNWVKFKAQSQLNKKcsavk 470  spotted green pufferfish
EDO19464      374 RDfgSKCE--LSNVFINKIMK-T----DFFDKILDVANQNDQNAL-KKS-DGT 417  Vanderwaltozyma polyspora DSM 70294
XP_001828929  450 SK--FGSKPTISDEFIKKVAK-S----GIVDNVLNWAKFKADQQM-KRadgtk 494  Coprinopsis cinerea okayama7#130
Q5FRH8        380 AS--RLVEGALRDRVDHWLGGNP----QQADTLLAFMVERAEERLRRREVKDT 426  Gluconobacter oxydans
Q1GFU3        378 AA--KMVENSVRDHFDNWLAADT----KSAGAILDFLILRAEERLRRRQEKET 424  Ruegeria sp. TM1040
Q5NQG9        364 VA--GLVEKAIRDHFDHFLTDDM----DRGRALLGFIMERMDERLRRRAERDI 410  Zymomonas mobilis
Q2S2H3        348 VR--SQVSGALRTELEQYLNDHS----STGEAIASRVVQAAKARRARRSASGG 394  Salinibacter ruber DSM 13855
Q6AKW6        321 VR--SWIVNKVREAVSSELYKHS----DTAEILLDKIQRNEKVRKELQSVRKE 367  Desulfotalea psychrophila
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