3DZD,5EXS


Conserved Protein Domain Family
Sigma54_activat

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pfam00158: Sigma54_activat 
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Sigma-54 interaction domain
Statistics
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PSSM-Id: 425491
Aligned: 221 rows
Threshold Bit Score: 188.379
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DZD_B 131 FVgEHPKILEIKRLIPKIAKSK---APVLITGESGTGKEIVARLIHR-----YSGR---K--GA----FVDLNCA--SI- 190  Aquifex aeolicus
Q833J4 106 VIgYRGSLAQTIEQLKMAALYPgggLPVLITGESGTGKSFLASLYYQf---cLSKElldD--SAp---FVTVNCAqyAN- 176  Enterococcus faecalis
Q8R5U8 130 IIgSEGSLKAQISLAKAAVLYPphgLHTLIVGPPGAGKSQLAEAMYNfavesGRFR---E--GAp---FVVFNCA--DY- 198  Caldanaerobacter sub...
Q8R5T3 117 IIgYNGSLKEQIEQAKAAVVYPpngLHTLIIGPPGSGKTYLAESMYK-----FGRR---KglKGs---FEVLNCA--DYy 183  Caldanaerobacter sub...
Q8Y6G6  82 LIgSEDSLKVSIQQAKAAILYPpngLHSLILGRTGTGKSLFAECMYQfakesETIP---A--DAp---FVSFNCA--DYa 151  Listeria monocytogenes
Q97M18  77 FVkNNLSLRQAVEQLKAAILYPpngMNCLILGNTGVGKSMFASLMHEyavemRVKE---K--GSp---FITFNCA--DY- 145  Clostridium acetobut...
Q815F4  16 IE--NTSLKIAIEKAKASILYPpngMHTLLLGETGVGKSMFASLMHEyaievEQLP---K--DAp---FIVFNCA--DY- 82   Bacillus cereus ATCC...
Q839Y1 122 IIgSAGSMKTPVEQAKAAILYPpkgLNCLITGPTGSGKTYFAHAMFQfaklnQIVA---K--EKe---FVVFNCA--DYa 191  Enterococcus faecalis
Q82ZR7 117 VIgFDGSLADAIKKLKAAILYPpngLNILLTGESGVGKTLIAEQLHQfy--qVKMN---Q--EVp---FIYFNCA--EYf 184  Enterococcus faecalis
Q8ZL25 111 LIgYDRSLRDAVEKGRAAVLYPh-gLHVLLTGPSGVGKTFFAELMHRf----ACEQ---A--SGaippLVYFNCAeyAH- 179  Salmonella enterica ...
3DZD_B 191 -PQE---LAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLG-G-N-Q-KIEV 262  Aquifex aeolicus
Q833J4 177 -NPE---LLTSQLFGHLKGAFTGADSDKIGAFQSAEGGVLFLDEVHRLSPEGQEKLFTFLDQGIIYRMG-EtN-R-PIPV 249  Enterococcus faecalis
Q8R5U8 199 -ADNp-qLLMAQLFGYVKGAFTGADTEKRGLVEKANGGILFLDEVHRLPSEGQEILFYLLDKGKFRRLG-E-T-EnTREA 273  Caldanaerobacter sub...
Q8R5T3 184 hNPQ---LLLSHLFGHAKGAYTGAFVERIGLVEKANNGILFLDEVHRLPPEGQEMLFYLIDKGMYKRLG-D-T-E-ERKV 256  Caldanaerobacter sub...
Q8Y6G6 152 qNPQ---LLFGHIFGVIKGAYTGAEETREGLLKKADGGILFLDEIHRLPPEGQEMLFTFIDKGEFRPLG-E-S-AnVHHA 225  Listeria monocytogenes
Q97M18 146 -SNNp-qLLTSQLFGIKKGTYTGADSDRIGLIEKANGGILFLDEVHRLPPEGQEALFTFLDKGIFRRMG-D-D-K-SRSS 219  Clostridium acetobut...
Q815F4  83 -ANNpqlLLGQ-LFGIKKGAYTGASDQK-GLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLG-E-T-EnERKA 156  Bacillus cereus ATCC...
Q839Y1 192 hNPE---LLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEGQEMIFYFMDHGVYARLG-E-TvK-SHHA 265  Enterococcus faecalis
Q82ZR7 185 nNPE---LLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTVLDKGYFTRMGeA-E-K-QRNV 258  Enterococcus faecalis
Q8ZL25 180 -NPE---LLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLDEVHRLSYEGQEKLFSILDKGEYRPLGvS-S-Q-PRSI 252  Salmonella enterica ...
3DZD_B 263 DIRVISATNKNLEEEIKKGNFREdlyyrlSVFQIY 297  Aquifex aeolicus
Q833J4 250 TCRLCFATTEEISSTFLTTFLRR------IPIQIK 278  Enterococcus faecalis
Q8R5U8 274 QIMLIAATTENPESALLL-TFRRr----iPVL-IE 302  Caldanaerobacter subterraneus subsp. tengcongensis
Q8R5T3 257 NVMIIAATTEK-IDSILLRTFIRr----iPVI-IQ 285  Caldanaerobacter subterraneus subsp. tengcongensis
Q8Y6G6 226 QVQIIGATTESPDNFLLE-TFTRr-----iPMTIT 254  Listeria monocytogenes
Q97M18 220 NVLIISATTENPNSSLLK-TFTRr----iPML-IT 248  Clostridium acetobutylicum
Q815F4 157 QVLIITATTEEPNSFLLK-TFTRr-----iPMTVT 185  Bacillus cereus ATCC 14579
Q839Y1 266 DVRIICATTENPTSSLLNTFVRr-----iPII-IQ 294  Enterococcus faecalis
Q82ZR7 259 SIKFIFATT----EAVNQ-HFLKtflrriPV-TLA 287  Enterococcus faecalis
Q8ZL25 253 SVRLICATTEPVGSALLR-TFQRr----iQVC-ID 281  Salmonella enterica subsp. enterica serovar Typhimurium
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