1BBC,6Q42


Conserved Protein Domain Family
Phospholip_A2_1

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pfam00068: Phospholip_A2_1 
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Phospholipase A2
Phospholipase A2 releases fatty acids from the second carbon group of glycerol. Perhaps the best known members are secreted snake venoms, but also found in secreted pancreatic and membrane-associated forms. Structure is all-alpha, with two core disulfide-linked helices and a calcium-binding loop. This alignment represents the major family of PLA2s. A second minor family, defined by the honeybee venom PLA2 Structure 1POC and related sequences from Gila monsters (Heloderma), is not recognized. This minor family conserves the core helix pair but is substantially different elsewhere. The PROSITE pattern PA2_HIS, specific to the first core helix, recognizes both families.
Statistics
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PSSM-Id: 425448
Aligned: 117 rows
Threshold Bit Score: 71.0872
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1BBC_A          2 LVNFHRMIKLTTGKeAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKrGC--GTKFLSYKFSNSGSRITC-- 77  human
1_pfamImport    1 LLNFVNKMKCVTGI-CPRDFEDYGCACRFEMEGLPVDEVDDCCFQHRKCYEEATDeECmwDPAKLTMDVSCLTKNLTCap 79 
XP_015210346   57 LFNFMQKLKCTTKL-CPRDLEDYGCSCRYEEEDRPIDDIDSCCSQHRRCYKAAAEkDCklQPGRILLNTTCPAGNITCda 135 spotted gar
XP_014345741  155 LPRIGEMIFCLTGR-CPQEFESYGCYCGQIGKGNPLDQLDRCCFYHQCCLEQTKRlGCr-PDRSISAEITCVDQTAYCsg 232 coelacanth
13_pfamImport   1 LPQLGEMLYCLTDR-CPEEFELYGCYCGQEGRGQPSDDLDRCCFSHHCCLEQVRKlGCh-PERNSRSEVVCFDHTPKCig 78 
12_pfamImport   1 MPQIGEMLFCLTAR-CPEDFESYGCYCGQEGQGDPADPLDRCCFSHHCCLEQVKKfGCglERSSRSEDAHYVAFAFLGrg 79 
XP_023419804  312 MVQLGEMLFCLTSR-CPEEFESYGCYCGQEGGGEPKDVLDRCCLSHHCCLEQVRRlGCl-PERRPRSTVLCVDRTPKCvg 389 domestic guine...
XP_005316416  300 MLPFGEMLFCLTSR-CPEEFESYGCYCGREGRGEPKDALDRCCVSHHCCLGRVRRlGCv-LERLPPSPVVCEDHTVKCvg 377 thirteen-lined...
XP_023504109  322 MPQLGEMLFCLTSR-CPEEFESYGCYCGQEGRGEPRDALDRCCFSHHCCLEQVRRlGCl-LERLSQSPVLCVDGAPKCvg 399 horse
XP_014962023  318 RSQLGEMLFCMTSR-CPEDFESYGCYCGQEGQGEPRDALDRCCLSHHCCLEQVRRlGCl-LERLPQSPVLCVDGTPQCvg 395 mouflon
1BBC_A         78 -AkqDSCRSQLCECDKAAATCFARnkTTYNKKYQ 110 human
1_pfamImport   80 eSe-DSCELFLCNCDKAAIECFLH--SRFNSSMN 110
XP_015210346  136 ---sDFCEEFFCLCDKAVIECIAH--SQYNSSLR 164 spotted gar
XP_014345741  233 ---fTLCDQFLCSCDKAAAECMAD--AFYNETLR 261 coelacanth
13_pfamImport  79 ---wTMCEKLLCSCDKAAAECMAA--ASFNETFS 107
12_pfamImport  80 ---qNFCEKLLCSCDQTAAECMAA--ALFNESFR 108
XP_023419804  390 ---qSLCEKLLCACDQTAAECMAS--ASFNQSLK 418 domestic guinea pig
XP_005316416  378 ---qSLCQKLLCACDQTAAECMAS--ASFNQSLK 406 thirteen-lined ground squirrel
XP_023504109  400 ---qSLCAKLLCACDQTVAECMAS--AVFNQSLK 428 horse
XP_014962023  396 ---wNLCAKLLCACDQSAAECMAS--AFYNQSLQ 424 mouflon
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