2L2M,6V5B,1UIL,5T16,2NUE,1QU6,6V5B,2DIX


Conserved Protein Domain Family
dsrm

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pfam00035: dsrm 
Click on image for an interactive view with Cn3D
Double-stranded RNA binding motif
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localization of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.
Statistics
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PSSM-Id: 425434
Aligned: 76 rows
Threshold Bit Score: 32.2019
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2L2M_A      9 CKNLLQE-YAQKMNya---iPLYQCQKVETLGRVT---QFTCTVEI--------GGIKYtGAAT-Rt-kKDAEISAGRTA 71   thale cress
Q5K7L9    462 AR-QFMEyYCHRYRfrkpdvEYTQTTVKDPQNKKKtkmVWEGVIIV--------GNRRIgMGSG-An-kKKAAIQCYLDV 530  Cryptococcus neof...
Q581T1   1025 AKTVLQR-YCNVAN------VNYPTFWKSRTVGPIscrVCLTTIEV--------PGHEYlRASGvAwnkEASQRQAAMHA 1089 Trypanosoma brucei
Q86L44      2 TKNDLQT-YIQQKR------IGYLPVYHSECRGPDherEYRTHIRVgein-skhNNKIVySDWY-Kn-kKTAESCCAIKV 71   Dictyostelium dis...
P22192    291 AKSKLFHkYSTLGH--------IEYRWVDGAGGSAe--GYVIACIF--------NGKEVaRAWG-An-qKDAGSRAAMQA 350  Schizosaccharomyc...
BAO93839   16 PKSQLQQ-CCLTLRteg-kePDIPLYKTLQTVGPSharTYTVAVYF--------KGERIgCGKG-Ps-iQQAEMGAAMDA 83   water buffalo
O01326    985 AKSHLQQ-WCLAMRdpsssePDMPEYRVLGIEGPTnnrIFKIAVYY--------KGKRLaSAAE-Sn-vHKAELRVAELA 1053 Caenorhabditis el...
Q9VLW8     96 MVKELRD-YCVRRE------MPLPCIEVVQQSGTPsapEFVACCSV---------ASIVrYGKS-Dk-kKDARQRAAIEM 157  fruit fly
Q6BX76    469 AKNELYSiLGKNMG------TIPIYEIYEMSSK-----QFRAELKV--------KGIHVaTAVD-At-kKRACSRAAMTI 527  Debaryomyces hans...
P34648    276 PKKALQK-FFEREG------FDMNFEFSEQGQGHTh--KWVCSIELpveidgvdRAFTAsATVS-Ts-kKDAQIQCALDA 344  Caenorhabditis el...
2L2M_A     72 LLAI 75   thale cress
Q5K7L9    531 TQYL 534  Cryptococcus neoformans
Q581T1   1090 LALL 1093 Trypanosoma brucei
Q86L44     72 LNYL 75   Dictyostelium discoideum
P22192    351 LEVL 354  Schizosaccharomyces pombe 972h-
BAO93839   84 LEKy 87   water buffalo
O01326   1054 LANL 1057 Caenorhabditis elegans
Q9VLW8    158 LALI 161  fruit fly
Q6BX76    528 INNK 531  Debaryomyces hansenii
P34648    345 CRIL 348  Caenorhabditis elegans
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