Conserved Protein Domain Family
ectoine_DoeB_2

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NF038260: ectoine_DoeB_2 
N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB2
This HMM describes a second family of N-alpha-acetyl-L-2,4-diaminobutyrate deacetylase, unrelated to the previously recognized DoeB described in TIGR02994. Because of the lack of homology, we reassign the gene symbol for this family from doeB to doeB2 in the interest of clarity. Ectoine is a compatible solute commonly used in halotolerant bacteria. This family was reported in halotolerant methylotrophs.
Statistics
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PSSM-Id: 439560
Aligned: 26 rows
Threshold Bit Score: 623.875
Created: 11-Oct-2024
Updated: 3-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_008247026   5 WLNTIAAAQTLRRDLHAHPEPSWQEVRTAETVQNTLSQLGIAWRKCAGTGTIATLQANSKiakphS--KHIALRGDIDAL 82  Zhongshania ali...
WP_019530073   5 WDSIIQQAVAFRHVLHRNPELAWNEINTAANIRQRLDQLKITWRACAEHGTVATIAAHAS-----G--KHIALRGDMDAL 77  Dasania marina
WP_010321738   5 WQTILHQAIQFRHQLHRQPELTWEEENTSSSIRAQLDALDISWRSCARYGTLATLAADAK-----G--PHIALRGDIDAL 77  Marinobacterium...
WP_019895360   5 WQTHLNDTRATRHWLHQHPELTWQEAGTARFVRAQLDALGIAWRPCAEHGCVATLAPHAA-----G--RHIALRSDMDAL 77  Hydrogenovibrio...
WP_011369641   5 WQGILEKAIASRHWLHQHPELTWEETQTADYIRAQLTELGIPWRACAQYGTVATLSPTAG-----G--KHIGFRADMDAL 77  Hydrogenovibrio...
WP_014454287  10 WETHVEAATAFRRQLHQHPELTWQEHNTATAIRQSLDALGIPWSSCAGTGTIARLHPDSTefpdaAdrPTIALRADIDAL 89  Spirochaeta afr...
WP_018179117   5 WPTVVAGAKRLRHDLHQRPELAWAEVDTAHTVRAALDDMGIEYRPCAGTGTVAQLAAGAD-----G--RHIALRADLDAM 77  Jongsikchunia k...
WP_013128672   5 WVETMARARTIRHQLHHRPEVAWAEHATAATVRAELDAIGIDWRACADTGTVARIAPAAR-----G--RRVALRADLDAM 77  Tsukamurella pa...
WP_013135018   5 FDEVVEFATNFRHNLHKNPELTWEETDTAKAIREILDKHNITYKTYAGTGTVGLLAQDKQ-----G--PHIALRGDIDAL 77  Arcobacter nitr...
WP_013887021   5 RAEILKFAVELRHKLHSQPETAWKEYNTSAYIREILTDNRIRWKKCAETGTIAVLAPEAK-----G--RHVALRTDIDAL 77  Flexistipes sin...
WP_008247026  83 PIIEQTGRDWSSTQSGCMHACGHDGHTATLLATARWLKHNEQSLTGPVTLLFQPAEEGGHGAREMINEGALDG------I 156 Zhongshania ali...
WP_019530073  78 PIQEQATNNYCSNVSGIMHACGHDGHTAVLWATAAWLKAHESELPGPVSFIFQPAEEGGHGAREMINAGALKG------I 151 Dasania marina
WP_010321738  78 PIHELTDLPYKSEVAGKMHACGHDGHTAALWATAAWLKAHEADLPGPVTLVFQPAEEGGHGARSMIEEGALEG------I 151 Marinobacterium...
WP_019895360  78 PIVEATGLDFASKQAGVMHACGHDGHMAALLGAAKWLKAHESALPGPVSLLFQPAEEGGHGARAMIEDGALEG------I 151 Hydrogenovibrio...
WP_011369641  78 PITEASGVDYCSVESGKMHACGHDGHTATLLAAAAWFKHHESELPNPISLLFQPAEEGGHGAKKMIEDGALNG------I 151 Hydrogenovibrio...
WP_014454287  90 PITEPGDLPWRSRIDGCMHACGHDGHTAALMLCASWLSENPKQLANPVTLLFQPAEEGGHGAREMIRDGALDN------V 163 Spirochaeta afr...
WP_018179117  78 PIAEDADHAYRSQQPGVMHACGHDGHTATLLAVARWLKLHEADLPGPVTLLFQPAEEGGHGAREMIADGCLAGapdvrpV 157 Jongsikchunia k...
WP_013128672  78 PITETTGLSYASATPGVMHACGHDGHTAVLLAAARWLHLHETELPGPVILLFQPAEEGGHGARGMIDDGALDD------V 151 Tsukamurella pa...
WP_013135018  78 PLEEKTDVSYKSVKTQCMHACGHDGHTATLMAAAIWLKQNEDKLTNPISLIFQPAEEGGHGAKKMIEEGCLDG------V 151 Arcobacter nitr...
WP_013887021  78 AIDEKTAVPYKSKVAGVMHACGHDGHTSALIAAALILKENEEKLDGPVTLVFQPGEEGGHGAKRILEEGCLKD------V 151 Flexistipes sin...
WP_008247026 157 DEIYGWHNWPAIPFGKLVCPDDIVMCGNGTFTITVTGKGGHASQPELCRDPVLAASAITLALQQIVSRRLAPQQAAVVSV 236 Zhongshania ali...
WP_019530073 152 EEIFGWHNWPAIPFGHAVCPDGAVMSGNGTFLIVLHGAGGHASQPELCRDPVLAASAVVLNLQQIISRRMAPQDAAVVSV 231 Dasania marina
WP_010321738 152 DRIYGWHNWPAIPYGQAVCPDGPVMSGNGTFEIELKGKGGHASQPEICRDPVLAAAAITLNLQQIVSRRLPPQSASVVSV 231 Marinobacterium...
WP_019895360 152 DEIYGWHNWPALPLGTAVCPTGAVMSGNGTFHITLKGHGGHASQPESTSDALLAASALILNLQQIVSRRLPPQVAAVVSV 231 Hydrogenovibrio...
WP_011369641 152 DRLYGWHNWPALTFGKALCPDGPVMSGNGTFHITLKGKGGHASQPEMTHDPVLAAAAVTLNLQQIVSRRLPPQANAVVSV 231 Hydrogenovibrio...
WP_014454287 164 DRIFGWHNWPAIPFGRAICPDGPVMSANATFTIDIHGVGGHSSQPELCRDPVLAGSEIVTSLQQLVSRRLPPQTPAVVSV 243 Spirochaeta afr...
WP_018179117 158 EAVFGWHNWPGLPLGQAICPNGPVMSANGTFQIGVRGQGGHASQPEATRDPVLAAAAITVALQQIVARRLSPQSSAVVAV 237 Jongsikchunia k...
WP_013128672 152 DVVFGWHNWPGLPAGRALCPDGPVMSANGTFQVTLHGRGGHASQPEATSDPVLAAAAVTVALQQIVARRTAPHDAVVVAV 231 Tsukamurella pa...
WP_013135018 152 DMIFGWHNWPAIKFGQAVCPEGTVMAGNGTFHITLKGLGGHSSQPEICKDPVLAASALTMALQQIASRQVAPQDAVVVSV 231 Arcobacter nitr...
WP_013887021 152 DCIFGWHNWPGIKFGEAVCPDGVVMAANGTFHIDFFGKGGHSSQPEICRDPVLAASAVVTALQQIVSRRVAPQDSAVVSV 231 Flexistipes sin...
WP_008247026 237 TSFMADSGATIIPQQAILGGSIRMPDQASRDQINALITEISQHTAHSYGVACEVEITPRYNATINHPKQAQHVRQLWQES 316 Zhongshania ali...
WP_019530073 232 TSIEAPSGPTVIPNMARLGGSIRLAKPELREKLNALITEITTSTALAYGVTAEVQVEDRYQATINHSKPAQRFRNVLADI 311 Dasania marina
WP_010321738 232 TSIDAINAPTVIPDRVRIGGSIRLAQPELRDTIDRLITEISEDTARTYGVSAQVTTVKRYEATVNNAQAAEAYRNALGET 311 Marinobacterium...
WP_019895360 232 TSMDARNALTVIGDKVLLEGSIRFADPAFQRPINDAIDTIAHGTAQSYGVTAEVEIRPRYNPTLNHAQPAAIYRDALRAE 311 Hydrogenovibrio...
WP_011369641 232 TSINAVSNVTVIPEHVKLEGSIRLSQPQWRAPINQLIEDITHATSSSYGVVAEVDIRARYDATINQADSAAEYRAALQAE 311 Hydrogenovibrio...
WP_014454287 244 TSFDAVSAPTVIRETARLEGSIRVADSTLTGHIGDLIHEIATAAAASCGTTAVVAYHPRYSATVNHPDAAAPARQVLAEV 323 Spirochaeta afr...
WP_018179117 238 TSLRAEAAATVTPDDAELAGSVRVANDHVRDHVFDLIAEISTAVAAAHGVDAAVETTARYGATVNHPEPAAELRGRLAAE 317 Jongsikchunia k...
WP_013128672 232 TSLTAESAATVTPGEATLAGSVRAADDATRSRVFAQITAVAEGTAVAHGVRAEVITTARYGATVNHPGAAAEYRDRLTAV 311 Tsukamurella pa...
WP_013135018 232 TSIDAISGVTVIPDNAKVEGSIRVPTNELKTKVFNQIEEISKGIALAYNVEVDIDLRDRYQPTINHKDEASRVREVLKDT 311 Arcobacter nitr...
WP_013887021 232 TSFEAPSGLTTIPEHSRIEGSIRISDTLMRDRVGEMIKNIAEKTADAYGVRAEVELRKRYGATVNDADSASFMRECLKNT 311 Flexistipes sin...
WP_008247026 317 NGSDSLHLNIRTPIMASEDFSYYLREIPGAFALIGADDGdAH------HQVPCHSPHYDFNDRLIPLVTNLFSRLCGV 388 Zhongshania aliph...
WP_019530073 312 YGPEWQSASTVVPIMASEDFSYYLQHIPGAFALIGMSSQ-EA------YSHPCHSPHYEFNDALISPVVRTLAALAGA 382 Dasania marina
WP_010321738 312 LGPDWQYKDMHLPIMASEDFSYYLNQVPGAFALIGMSKT-DA------YQAPCHSPEYAFNDDLIGSVVKVFSRLVGA 382 Marinobacterium s...
WP_019895360 312 LGADSDQVDLRLPLMASEDFSYYLNQIPGAFALVGMAQT-NAkndqawYSAPCHSPQYQFNDRVLDSVMRVFCRLAGV 388 Hydrogenovibrio h...
WP_011369641 312 LGETATESELLMPLMASEDFSYYLQAIPGAFALVGMAEE-SEng--qrFSAPCHSPEYVFNDRVIGHVVKVFSRLAGA 386 Hydrogenovibrio c...
WP_014454287 324 LGADCSHTDIQLPLMASEDFSYYLEQIPGAFMLIGSAVG-GR------YATACHNPGYEFNDDLLPAAARCLLQLAGC 394 Spirochaeta africana
WP_018179117 318 FGDGWSRHDSVAPVMASEDFSYYLQRIPGAFALIGGSP--ED------AGVPLHSARYDFDDRLIDPVARILIGLAGV 387 Jongsikchunia kro...
WP_013128672 312 LGEEW-SAGAAVPVLASEDFSYYLREVPGAFALLGSG-----------TEAPLHSGDYDFDDELLDPATRLLVGLAGA 377 Tsukamurella paur...
WP_013135018 312 LGENW-QSNIATPIMASEDFSYYLNKIPGAFALVGSDDGvEK------HQKACHNVHYDFNDKLIKPVSISLMKLANF 382 Arcobacter nitrof...
WP_013887021 312 LGENW-KSDIKMPVMASEDFSYYLEKIPGAYALIGSDDG-RG------HNIACHNAAYDFNDRLIEPAAELLVKLAGI 381 Flexistipes sinus...
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