Conserved Protein Domain Family
GBS_alph_likeN
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NF035941: GBS_alph_likeN 
alpha-like surface protein N-terminal domain
Most Group B Streptococcus (GBS) have a member of a mosaic family of repetitive surface protein. The founding member is the alpha C protein (bca), but other named members with complete sequences include Alp2, Alp3, and Rib. This HMM describes the shared, non-repetitive N-terminal region, including a YSIRK-like signal peptide region.
Links
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Statistics
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PSSM-Id: 411530
Aligned: 5 rows
Threshold Bit Score: 402.707
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_017771610    1 MFRRSKNNSYDTSQTKQRFSIKKFKFGAASVLIGLSFLGGVTQGNLNIFEESIVAASTIPGSAATLNTSITKNIQNGNAY 80   Streptococcus...
WP_000489955    1 MFRRSKNNSYDTSQTKQRFSIKKFKFGAASVLIGLSFLGGVTQGNLNIFEESIVAASTIPGSAATLNTSITKNIQNGNAY 80   Streptococcus...
WP_017645106    1 MFRRSKNNSYDTSQTKQRFSIKKFKFGAASVLIGISFLGGFTQGQFNISTDTVFAAEVISGSAATLNSALVKNVSGGKAY 80   Streptococcus...
WP_000489899    1 MFRRSKNNSYDTLQTKQRFSIKKFKFGAASVLIGISFLGGFTQGQFNISTDTVFAAEVISGSAVTLNTNMTKNVQNGRAY 80   Streptococcus...
WP_003044540    1 MFRRSKNNNYDTSQTKQRFSIKKFKFGAASVLIGISFLGGFTQGQFNISTDTVFAAEMIPGSAATLNTSITKNMQNGNAY 80   Streptococcus...

WP_017771610   81 IDLYDVKNGLIDPQNLIVLNPSsYSANYYIKQGAKYYSNPSEITTTGSATITFNILDETGNPHKKADGQIDIVSVNLTIY 160  Streptococcus...
WP_000489955   81 IDLYDVKLGKIDPLQLIVLEQG-FTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIY 159  Streptococcus...
WP_017645106   81 IDIYDVKNGKIDPLNLIVLNPSnYSANYYIKQGGRIFTSVNQLQTPGTATITYNILDENGNPYTKSDGQIDIVSLVTTVY 160  Streptococcus...
WP_000489899   81 IDLYDVKNGKIDPLQLITLNSPdLKAQYVIRQGGNYFTQPSELTTVGAASINYTVLKTDGSPHTKPDGQVDIINVSLTIY 160  Streptococcus...
WP_003044540   81 IDLYDVKLGKIDPLQLIVLKQG-FTATYVIKQGTQYYGDVSQLQSTGGARVTYNIFSENGQPHVKDDGQTDIVSVSLTVY 159  Streptococcus...

WP_017771610  161 DSTALRNRIDEVINNANDPKWSDGSRDEVLTGLEKIKKDIDNNPKTQIDIDNKINEVNEIEKLLV 225  Streptococcus agalactiae
WP_000489955  160 DSTTLRDKIEEVRTNANDPKWTEESRTEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLV 224  Streptococcus agalactiae
WP_017645106  161 DTTELRNNINKVIENANDPKWSDDSRKDVLSKIEVIKNDIDNNPKTQSDIDNKIVEVNELEKLLV 225  Streptococcus agalactiae
WP_000489899  161 NSSALRDKIDEVKKKAEDPKWDEGSRDKVLISLDDIKTDIDNNPKTQSDIANKITEVTNLEKILV 225  Streptococcus agalactiae
WP_003044540  160 DTTILREKLDDLKKKAEDPKWSENSRNEVLEGVHTITEDLDNNPQTETAINDKITSVDELDKKLV 224  Streptococcus canis
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