Conserved Protein Domain Family
LGIC_1

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NF033918: LGIC_1 
ligand-gated ion channel
Prokaryotic ligand-gated ion channels (LGICs) are a large group of transmembrane transporters, which might contribute to adaptation to pH change.
Statistics
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PSSM-Id: 411479
Aligned: 4 rows
Threshold Bit Score: 521.717
Created: 19-Oct-2021
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014547749  33 TLVKTSAFITDIHSLDEVSEQLQIDVIFRFSWNDPRLEFNENKVKNPYKLYQGDFQYDEVFEGWKPQISIINEIGSPQIK 112 Francisella his...
WP_146420977  35 TIVKTSAFITDIQSLDEVNEQLQIDVIFKFRWNDPRLKFNANEEKTPYILYQGDFQYDEIFEGWKPQISIINEVGSPQIK 114 Francisella
WP_119329628  33 TNIQTTAFVTDIINVDELNEQLQIDAIFKYEWNDPRLKFDPQKENANYKLYQGEFQLAEVFQGWRPQVSIINEIGSPQIK 112 Pseudofrancisel...
WP_108682538  40 TVVKVGIFLADIIDLDEMDETFQAELIILAEWMDPRLAFDAEEYGSDRKLFQGGFQFDEVFGGWWPSLIFLNEIGSGDLN 119 Methyloceanibac...
WP_014547749 113 ARQIKIYPNGDVIYIEQRTLQLETPMQLKKFPFDKQVLKAYIIPFGYNSKEVQLKVEPNDKITVKDYVKEHPNINIAEWH 192 Francisella his...
WP_146420977 115 ARQIKIYPDGNVVYTEQRTLHLETPMQLEKFPFDKQTLKAYIIPFGYDSNEVKLVVEPNHRITVKDYVKDHPNVNIAEWH 194 Francisella
WP_119329628 113 AIQLKVNYNGHIILKEHRSLTLETPMKLEKFPFDKQKLKIYMIPFGYDIDEVQLSVSPNAKMMVKEYVKNNPNINIAEWS 192 Pseudofrancisel...
WP_108682538 120 ALQIEVFSDGRVRAKEQRNVTLETPMKLHSFPFDSQVLEADMIAFGDTSREVVLEVHQGMLGASEEYAETNQRVNIAQWQ 199 Methyloceanibac...
WP_014547749 193 LTNFNLANTEPTKYYYGKPEKISMIEFSISLKRKPTNIILKVLIPLTLLVLAMWAIFWMDTKALSDRLNIAFIGILSVIA 272 Francisella his...
WP_146420977 195 LTNFNLVNTNPTKYYYGKSEKVSMLEFSISLERKPTNILLKVLIPLTLLVLAMWAVFWMDTKALSDRLNIAFIGILSVIA 274 Francisella
WP_119329628 193 LKDYKLTIDKPIKEYYGPAKEISRLILEISLDRKPSNILWKVLLPLTLLVLGMWAIFWMDKEALSDRLNISFIGILSVIA 272 Pseudofrancisel...
WP_108682538 200 LVNVDMTPFISKTRYYAEDAEVSGVKLAITLKRNPMNIIWKVLAPMVILVSLMWAVFWMDIHDLSDRLNVSFIGILTIVA 279 Methyloceanibac...
WP_014547749 273 YQFLIEGEMPDIDYLTFTDGFLLLSFSILFSTVLESLIVYWLVKTNKQSLARNVDIFSRVAFPLT 337 Francisella hispaniensis
WP_146420977 275 YQFLIEGEMPDIDYLTFTDGFLLLSFTILFSTVLESLIVYWLIKLDKQSFAKRLDIFSRFAFPIT 339 Francisella
WP_119329628 273 YQFLVEGEMPRIDYFTFTDSFLLISFIILFSTILESLIVSRLTRNNKKQLAIKIDNIFRYLFPLA 337 Pseudofrancisella aestuarii
WP_108682538 280 YQFLIDGTMPRISYFTLTDTVVLYSFVIMCLTILESLVVVSLSRADQDTVARRVDATAQWLFPVV 344 Methyloceanibacter sp. wino2
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