Conserved Protein Domain Family
NlpC_inact_RipD

?
NF033743: NlpC_inact_RipD 
NlpC/P60 family peptidoglycan-binding protein RipD
RipD proteins, such as founding member Rv1566c from Mycobacterium tuberculosis, is a catalytically inactive paralog of the peptidoglycan endopeptidases RipA and RipB. A catalytically important Cys and His pair is replaced by Ala-83 and Ser-132.
Statistics
?
PSSM-Id: 411328
Aligned: 20 rows
Threshold Bit Score: 233.031
Created: 20-Oct-2021
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_020100253      5 RRIIV---TVASAALLAapmavaapLVSApLASADST-WTGGTHRQAIDFVIQRALSQRGVPFVYGGGNANGPSLPPasv 80  Mycobacteriu...
2_ncbifamImport   1 KRSMKsgsFAIGLAMMLap-----mVAAPgLAAADPA-TRPVDYQQITDVVIARGLSQRGVPFSWAGGGISGPTRGTg-- 72 
WP_015356015      2 KRIYa---FAIGLVMMAap-----mAAAPgIAAADPS-VRPVDYQQATDVVVARGLSQRGVPFSWAGGGITGPSRGKg-- 70  Mycobacterium
WP_003876183      2 KRIYa---FAIGLALLGapa--apmVVPP-VATADPG-VRAMDYQQATDVVIARGLSQRGVPFSWAGGGINGPTRGTg-- 72  Mycobacteriu...
3_ncbifamImport   1 NRIYt---FVTGLAMLVts-----iLTCS-LAYADSG-TRTADYQQTIDTVVQRALAQRGVPFSWAGGGVSGPTRGTg-- 68 
WP_015307360      2 KRICA---VMIGLALL---------IATPgVATADA------THQKLINLVIQRALSQRGVPFAYGGGTVSGASLGTvav 63  Mycobacteriu...
WP_011855727      2 RRIYA---VVICLALS---------LATAgTASAELF-PLPTRNQQAVDLVIARALSQRGVPFAYGGGNTAGPTLGNpgg 68  Mycolicibact...
4_ncbifamImport   1 KSTYA---VLLGIALL---------LVTPgLASADVP-RSPVDRQQAINAVIARGLSQRGVPFTYGGGNTDGPTTSTdta 67 
WP_013137124      2 RRVPAa--MIAGLVFLG--------TAKS-FALAEPVnHPVNDEQQSVSTAIARALAQRGMPYVYGGGNAQGPTGNP--- 67  Segniliparus...
WP_013829096      2 KRICA---TAIALAAAMap-----tLSAAgPAGADP--LSQTGQNQLIDRVVQRALSQRGVPFVYGGGDINGPTNNArar 71  Mycobacteria...
WP_020100253     81 ttsaapvtqpapqvglqpmgvaqpaaapqtnaiipglsglfgpsptagaltPAPTTPGFDASGLVQYAFAGVGIKLPRSS 160 Mycobacteriu...
2_ncbifamImport  73 ---------------------------------------------------TGINTVGFDASGLIQYAYAGAGLKLPRSS 101
WP_015356015     71 ---------------------------------------------------TGIYTVGFDASGLIQYAYAGAGIKLPRSS 99  Mycobacterium
WP_003876183     73 ---------------------------------------------------TGANTVGFDASGLMQYAYAGAGIKLPRSS 101 Mycobacteriu...
3_ncbifamImport  69 ---------------------------------------------------TGSNTVGFDASGLIQYAYAGAGLKLPRSS 97 
WP_015307360     64 etpvdpaapalgttqlpatqppp--tqplpttvgatglslspvttpapaaeQRVSRVGFDASGLIVYAFAGAGIKMPRSS 141 Mycobacteriu...
WP_011855727     69 ssapapaaappgaipvdgt-----------ngaipiaglpaaapalvlpepPRPQVVGFDASGLMVYAFAGAGLKIPRTS 137 Mycolicibact...
4_ncbifamImport  68 paapeants-------------------------------llglipapvaapTPKVPGFDASGLMVYSYAAAGIKLPRRS 116
WP_013137124     68 ---------------------------------------------------NGTGVVGFDASGLMVYAFAGAGVKLPRTS 96  Segniliparus...
WP_013829096     72 aattrgaltdltgrtsrpgg---------piaagsttpglpgttpapgediPDTTTVGFDASGLIQYAFAGAGIKMPRTS 142 Mycobacteria...
WP_020100253    161 GEQY-KVGRKITADQALPGDLLFYGPAGSQSVALFVGNGQMIEGTEpSVTVGPVRTNGMDPYLSRIIE 227 Mycobacterium sp. 360MFT...
2_ncbifamImport 102 GQMY-KVGQKVLPQQARKGDLIFYGPEGTQSVALYLGKGQMLEVGD-VVQVSPVRTNGMTPYLVRVLG 167
WP_015356015    100 GEMY-KVGQKVLPQQARKADLLFYGPEGTQSVAMYLGNGQMLEVGD-VVQVSPVRTTDMMPYLVRIIG 165 Mycobacterium
WP_003876183    102 GAMY-RVGQKILPQQARKGDLIFYGPEGTQSVAMYLGNNQMLEVGD-VVQVSPVRTAGMAPYMVRVLG 167 Mycobacterium avium
3_ncbifamImport  98 GEMY-KVGQKVLPRHARRGDLIFYGPEGTESVTLYLGDEKMVEVGE-VVQVSPVRSNGMAPYLVRVLG 163
WP_015307360    142 GEQY-KVGQKVLPSQALPGDLLFYGPDGTQSVALFIGNGQMVEATDtGVAVSPVRTNNMAPYLSRIIA 208 Mycobacterium sp. JS623
WP_011855727    138 GDQY-LVGRKVLPSQALPGDLIFYGPNGTQSVAMFIGGGQMVEATDpVVQVSPVRTNNMAPYLVRYID 204 Mycolicibacterium
4_ncbifamImport 117 GDQY-NVGRKILPAQALPGDLIFYGPNGSQSVTMFLGNNLMLEASEpAVQVSQVRFNDMAPYLVRVIE 183
WP_013137124     97 TDQYnKAGRSVWPQQAQPGDLIFYGPNGTESVAMYLGNGQMLEATNpVVTISPVRSEGMAPYMIRVIG 164 Segniliparus rotundus
WP_013829096    143 GEQC-SVGQKVPPAQARAGDLLCYGPGGTQSVALYLGNNQMIEGTSpAVAVSPARTSNMVPYLTRVIP 209 Mycobacteriaceae
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap