Conserved Protein Domain Family
Ni_dep_LarA

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NF033504: Ni_dep_LarA 
nickel-dependent lactate racemase
LarA from Lactobacillus plantarum is a nickel-dependent lactate racemase and the founding member of a family of isomerases that depend on a nicotinic acid-derived nickel pincer cofactor. While it is not yet clear which homologs of LarA act preferentially on lactate, this model identifies one clade of architecurally similar proteins from among a broader set of LarA homologs. Note that the crystal structure 4NAR, on deposit at PDB but not associated with any publication, represents a protein from Thermotoga maritima that falls outside the scope of this family and that is annotated in PDB as a putative uronate isomerase.
Statistics
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PSSM-Id: 411145
Aligned: 74 rows
Threshold Bit Score: 421.913
Created: 20-Oct-2021
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_007048164      2 ESMKYSDTAFPVALDPRQIVAEVHANTVDLp---KRTVREHIEYALDHPIGAGPLSEAVRPGDKVCIIISDTTRrWQQPS 78  Subdoligranu...
WP_015905076      3 IQLPWGDDTLDLNVPDTWDLVWPDSAAENIhpgtGMDESLLVEHALDRPMGMPPLETMDLKKKKILIIVDDNTR-PTPVH 81  Desulfobacte...
WP_003542528      3 IRFEHYADIEPLEIPDQNLVGIYSPTEVKL----EKSEKQIIQEAFQNPIGTPPIHQMVKPDDKVLILVDDITR-TTPTD 77  Desulfotomac...
WP_013224947      6 VRLAYGETGLELAI-DPAVTTVVTPVHHPV----AQPADVLLRRALREPVAGPPLRDRVRPGQTVAISACDGTR-PQPRE 79  Amycolatopsi...
WP_007289880      4 VKLAYGRTDLVIRVPDQAV--VIEPRHLEG----LADEKAAVLAAIRNPIGTPPLKDMVKPTDTVAIVISDITR-PTPNH 76  Thermosinus ...
WP_018132283      3 VTLSYGKQGLTVDVPDTAV--VVEPRHLAG----LPDEKAAVVNALRHPIGCPPLCEMVKPTDRVAIVISDITR-PTPNH 75  Effusibacill...
WP_010677384      3 TTLLYGKENLTINVPDDAL--ILEPQNPLG----LADEIGALQDALKNPIGSPPLAEMVKSTDKVAIVISDITR-PTPNE 75  Bacillus tim...
WP_002482128      3 TSILYGKSNVEIDLPDHSV--LIEPTDIDA----LDDDTNAIRNALADPIGTKPLKEMVSANQTVAIVISDITR-PTPNH 75  Staphylococcus
WP_002448900      3 THVLYGKSEVEVEVPDDS--TVIEPQNIEA----LEDYTSAIQNVLRHPTGSKPLKELVNKDDIVSIVISDITR-PTPNH 75  Staphylococc...
2_ncbifamImport   1 TQVLYGKSEIEINVPDDS--TIIEPQNIDA----IQDYESTIKNVLRNPTNSKPLKEMVNSNDIVSIVISDITR-PTPNH 73 
WP_007048164     79 TYLPVLVERLNQAGIPDRDILILCATGTHRQQTEEEHISLVGEDLYRRIRFIDHNCDDKEHLTYMGTTRRGTPVWLDSYA 158 Subdoligranu...
WP_015905076     82 RFFDRILDRLERAGADFDRITLMPGLGIHTAMTRTEMEEKVGKASLARIAWKNHDAFDEKANHFFGTTSRGTPVELNQAV 161 Desulfobacte...
WP_003542528     78 IILPELMNELVN--VKKENITLMVALGTHRPMTNEEKIKKYGKEIVENYKIVDHHWQDTESLVETGTTPNGTKIIINKAI 155 Desulfotomac...
WP_013224947     80 LMIPAILAELDG-IVRLEDVVVLVATGTHRGNSAAELRAMFGDEIVDTVRIVNHDARDRASLTWLGRHGDDVPVWLNSEW 158 Amycolatopsi...
WP_007289880     77 KLVPWLIEELNH--VPRENFVIINGLGSHRANTREELISMLGREVVENYRVINHNAFDDAELTFVGVNGYGSKVYLNKTY 154 Thermosinus ...
WP_018132283     76 KLVPWLLEELSH--VPLEQFVIINGTGTHRDQTRDEFIQMLGEWVVDNVRIINNNCHDKSTQAKVGSSRFGCDVYLNKEY 153 Effusibacill...
WP_010677384     76 KLVPALIKELDH--VPLENFVIINGTGTHRDQTEEEFVQMLGQWIVDNVRIINNHCHDKETLVKVGHSKFGCDVYLNKEY 153 Bacillus tim...
WP_002482128     76 ILVPLILETLSH--VPPENFVIINGTGTHRDQTQEELIQMLGKDVVDQIKIVHNHCNDKDTLSKVGHSKYGCDVYLNKDY 153 Staphylococcus
WP_002448900     76 ILVPLLIEELNH--VPRENFVIINGTGTHRDQTRDELIQMLGEDIVDSVKIVQNHCNEKENLIKVGHSKYGCDAYLNKDY 153 Staphylococc...
2_ncbifamImport  74 ILVPLLIEELNH--VPRENFVIINGTGTHRDQTRDELIQMLGEDIVNSVKIVHNHCSEKESLAKVGHSQYGCDVYLNKAY 151
WP_007048164    159 MACDKIILTGGVVYHFLAGFGGGRKSIVPGIAGRETINTNHNNALNPglgsgsNPKACN-GNMTEsNPFHSDLVECAAFA 237 Subdoligranu...
WP_015905076    162 FESDLIIAIGLVEPHLWAGFGGGFKNILPGVASANCIGVHHALISRPp-----YLVNRV-GMAPEdNSFRLDLEEACTLI 235 Desulfobacte...
WP_003542528    156 LEADFTIGIGHIVPHVVAGYGGGGKIVQPGICGAETTGQTHWLSAK-------YEGCDImGKADN--SVRLEMEEVARES 226 Desulfotomac...
WP_013224947    159 VAADVRITTGFVEPHFFAGFSGGPKLVAPGLAALETVLVLHDARRIG------HANATW-GVTEG-NPVHDDVRAIAAAT 230 Amycolatopsi...
WP_007289880    155 VEASFKIVTGFIEPHFFAGFSGGPKGISPGVAGISTILDFHNAQMIG------HPNSTW-GIIEG-NILQDAATQNCLMA 226 Thermosinus ...
WP_018132283    154 VEADFRIVTGFIEPHFFAGFSGGPKGIMPGIAGIETILAFHNARMIG------DPAATW-GNMEG-NPVQEMSREVNRMC 225 Effusibacill...
WP_010677384    154 VEADFRIVTGFIEPHFFAGFSGGPKGIMPGIAGIETIMTFHNARMIG------DPLATW-GNMVN-NPLQEMTREINMMC 225 Bacillus tim...
WP_002482128    154 VEADFKIVTGFIEPHFFAGFSGGPKGIMPGIAGIETIMTFHNAKMIG------DIRSTW-GNMTD-NPVQDMTREINAMC 225 Staphylococcus
WP_002448900    154 VASDFKIVTGFIEPHFFAGFSGGPKGIMPGIAGLETIQTFHNAKMIG------DPRSTW-GNLED-NPVQDMAREVNNMC 225 Staphylococc...
2_ncbifamImport 152 VESDFKIVTGFIEPHFFAGFSGGPKGIMPGIAGLETIQTFHNAKMIG------DPRSTW-GNLED-NPVQDMAREVNRMC 223
WP_007048164    238 -KPAYLLNVIVDDNYQIVGAFAGDWQKAHAAAAKVVEQLDGVPIPRRTPLVVSSAggYPKDINLYQTSKTLSNALAAVAP 316 Subdoligranu...
WP_015905076    236 aAPVFCVNVCLDRSANIVAAFSGDGVKVHRKGVAFNHGLSGRRLSSAVDGIIVNS--FPMDFNFKQSMKGVANSLPALKP 313 Desulfobacte...
WP_003542528    227 -GLKVIINAVQDGKGRLVGVFVGDLVAAHRKGVELAQQVYGVKIPQLFDIVVYDS--YPADIELWQAAKGIYSADLAVRK 303 Desulfotomac...
WP_013224947    231 -GVTFALDVILNRDKAVIGAFGGDLLAMHATAARAARDVAMRPVPAPFDVVVTTNsgYPLDQNLYQSVKGMSAAHRITKP 309 Amycolatopsi...
WP_007289880    227 -KPDFMLNVTLNGKKEITNVFAGDVIKAHRLGCEFVKEHAMYAVDSPFDIVITTNsgYPLDQNLYQTVKGMSAAAQIVKQ 305 Thermosinus ...
WP_018132283    226 -KPDFMLNVTLNGNKQITGVFAGELFAAHAAGCEFVKEHVMIRCDHRFDVVITSNsgYPLDQNLYQAVKGMSAAHQIVRR 304 Effusibacill...
WP_010677384    226 -KPHFMLNVTLNRDKQITNVFAGELMAAHDKGCEYAKEHAMTKCDQRFDVVITSNsgYPLDQNLYQAVKGMSAAHKIVKK 304 Bacillus tim...
WP_002482128    226 -KPDFMLNVTLNKEKEITAVFAGELYEAHDKGCAYAKAHAMFKCDDRFDVVIASNsgYPLDQNLYQTVKGMSAAHKVVKE 304 Staphylococcus
WP_002448900    226 -KPNFMLNVALNKDKQITEAFGGDVFEAHKEGCAYVKEHAMFKCDDRFDVVIASNsgYPLDQNLYQTVKGMSAASKVVKK 304 Staphylococc...
2_ncbifamImport 224 -KPDFLLNVALNKSKEITAAFAGEIFDTHKEGCAYVKDHAMFKCDQRFDIVIASNsgYPLDQNLYQTVKGMSAASKVVKK 302
WP_007048164    317 GGTMILLSQCREGFGdp--dcEAQICNFDSMEAREKAL----RADFSI-------------GGFVGFLFAETAEHYH-LI 376 Subdoligranu...
WP_015905076    314 GGVVMGFLKADKGLD------DIVLPQRSLPRWLLKQIlkilGPSRTLwfletmrpgidveEKFLLYYSMHLIRQYElLF 387 Desulfobacte...
WP_003542528    304 GGVIILVSPCPEGVSrvhktiLE--EGYGTFEEVQDKVnkgkIKDLTV-------------AAHLVHV-GRVIKQKP-CI 366 Desulfotomac...
WP_013224947    310 GGTIVCAAECRDGFPdhg-syREVLASASSPAALLAEIa--aRRETVP-------------DQWQVQIQAKIQDDCR-VV 372 Amycolatopsi...
WP_007289880    306 GGSIISASECSDGVPdhg-nyAKILQMRSTPQELLDMIn--dPSFLMF-------------DQWQVQVQAMIQLKAE-CY 368 Thermosinus ...
WP_018132283    305 GGTIICAAECSDGLPnhg-nyAKILQMRKTPQEILEMIndpsFQMF---------------DQWQVQKQAVIQTWAD-VY 367 Effusibacill...
WP_010677384    305 GGAIIIASECSDGLPshg-nyADILKMANSPQELLDMInnpeFKTF---------------DQWQVQKQAVIQVWAD-VY 367 Bacillus tim...
WP_002482128    305 GGSIIMLSECSDGYPnhg-nyAEILKMADSPQGLVDMIs--dPNFAML-------------DQWQVQKQAVIQTFAD-VY 367 Staphylococcus
WP_002448900    305 DGNIIMVSECADGFPdhg-kfAEIFKISDTPQGILDLIh--dPNFSEV-------------DQWQVQKQASIQTFAN-VY 367 Staphylococc...
2_ncbifamImport 303 DGHIIMVSECADGFPdhg-kfAEIFKMADTPQGILELIh--nPNFKEV-------------DQWQVQKQASIQTFAN-VH 365
WP_007048164    377 LVTDIPA-ERFAHTKIQVARTLDEALALAARANGGslDgVETTLMPHGGSTFPLP 430 Subdoligranulum variabile
WP_015905076    388 HVPTLDDhEVKQLGMFKQFYHPQALVDRAARMMKK--E-SRVAVFPEAGATFPIL 439 Desulfobacterium autotrophicum
WP_003542528    367 MVSPGIPkADKEKVGIIHADTPSQALEQAFKMVGP--D-AKIGVFQHGGEIMPVL 418 Desulfotomaculum nigrificans
WP_013224947    373 MHTGTLTeADLATAHLTRTTDIATTVAEALDRAGP--G-ARACVLPEGPLTIPYV 424 Amycolatopsis mediterranei
WP_007289880    369 LYSTLDD-DTVRRAMFTPIHSIEDTLYELLKKYGP--D-ATIAVLPLGPLTIPYV 419 Thermosinus carboxydivorans
WP_018132283    368 VYSELSD-ADIERAMLKPTRDIGQTLRELQAKYGD--A-MSVAVLPLGPLTIPYV 418 Effusibacillus pohliae
WP_010677384    368 VYSLLTD-EQVTQAMLKPTHNIEETVEQLKEKYGK--D-MSVAVLPLGPLTIPYV 418 Bacillus timonensis
WP_002482128    368 LYSKLTD-KQTTDAMLHPVHEINNTLKELETKYGT--D-MTIGVMPLGPLTIPYV 418 Staphylococcus
WP_002448900    368 VYSELTD-QQLKDSMLNPTSNIEKTIADLEEQYGR--K-LSIGVMPQGPLTIPYV 418 Staphylococcus hominis
2_ncbifamImport 366 VYSELTD-QQLKDSMLIPTSNIEHTIQELEHRYGR--K-LTIGVMPQGPLTIPYV 416
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