Conserved Protein Domain Family

NF033496: DUF2080_fam_acc 
DUF2080 family transposase-associated protein
Members of this family appear restricted to the archaea. They tend to be encoded upstream of predicted transposase genes within insertion sequences such as ISNagr11, ISHca1, ISH36, etc. The widespread distribution suggests this protein may be more than a mere passenger gene and may participate in some transposase-associated function. See pfam09853, COG3466, and arCOG03884 for alternative (currently narrow) treatments of this family.
PSSM-Id: 411138
Aligned: 69 rows
Threshold Bit Score: 36.6354
Created: 20-Oct-2021
Updated: 25-Oct-2021
Aligned Rows:
Sequence Alignment
Format: Row Display: Color Bits: Type Selection:
WP_012980693    16 FPAI-FGKIKEQGNSARFypSIPAEYVGKKAVLVILE 51  Methanocaldococcus sp. FS406-22
WP_013179897     1 MILLkERLVKPYGSGAKL--NISKRYLGKLALIILVE 35  Methanococcus voltae
WP_013180925     1 MIILdEKLVKPYGTGAKI--NLSRKYLRKRAITIIIE 35  Methanococcus voltae
WP_018203238    13 VKMYfEKKITRFGNSAKI--DCPKKFIGKKAIIVIEI 47  Nanoarchaeota archaeon SCGC AAA011-L22
KYK34362         7 VEIVyEKRVTPFGNGAKV--DAPKRYIGNRVYVIILK 41  Theionarchaea archaeon DG-70-1
OGJ17895        34 EEIL-EKEVKPFGNASHI--ILPKEYTRKKARVILSK 67  Candidatus Pacearchaeota archaeon RBG_13_36_9
WP_081460635     4 EKTI-EKQVKPFGNTGHI--TLPKKLVGKQVEVKIKD 37  Methanococcus maripaludis
WP_012193440     3 EKTI-IKQVKPSGNTGHV--TLPKKLIGKKVKITIKE 36  Methanococcus maripaludis
WP_011977270     6 KKPI-EKQVKPFGNTGHI--TLPKSWIGKKVKIKIQG 39  Methanococcus maripaludis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap