Conserved Protein Domain Family
KOG0306

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KOG0306: KOG0306 
KOG0306, WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Statistics
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PSSM-Id: 228255
Aligned: 6 rows
Threshold Bit Score: -1
Created: 20-Jun-2003
Updated: 16-Jan-2013
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
12230773   3 LTKQYLRYVASAVFGVIGSQKGNIVFVTLRGEK------GRYVAVPACEHVFIWDLRKG--EKILIL------QGLK--- 65   human
7300370    3 LTKQYLAYRAIDSFNIITSGRANVNFAVVDKTE------GRYVAAPAAENVIVWDLRMG--DRKLTL------RREK--- 65   fruit fly
17533163   3 LTKDYLKYEHAGSCGCVGS--ANGQLVAID---------GQTVAVSANEYLNFYNMRTAekVNEIIE-------STK--- 61   Caenorhabditis ele...
19074072   1 MEELEDGFVPDFVHLATAGEVANRNSLVKRv--------GNAMYISVGSQINAWNIRFSeiEKSIFT------LKKR--- 63   Encephalitozoon cu...
3183237    1 MVKSYTRYEPTEFFGVIASSGCNILGQPSSSAKs----vGRAIVG-GLESVLEWDLKTG---QLLSK------WKDSdc- 65   fission yeast
3121995    1 MVKSYQRFEQAAAFGVIAS-NANCVWIPASSGNsngsgpGQLITS-ALEDVNIWDIKTGdlVSKLSDglppgaSDARgak 78   baker's yeast
12230773  66 -QEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSG---EGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESG 141  human
7300370   66 -FEVTSLRVSPDHLHIAVGYADGMVQIFDLSSDryyDPICTLALHKNAVSILRYDLQGMRLVSGGLDTELVVVDVVEQAG 144  fruit fly
17533163  62 --PISCVRQCENKPLLAIGYADGSVKLFNQENEd--SEPIMFSGHKKAVNCIEFSSDGLLFATGGKDGVIVLWDILAERG 137  Caenorhabditis ele...
19074072  64 --ITHFDFS-DGIL--VVGYENGVVQIHSNE-----IISFRP--HSRRVT--KVAKIGDCILSSSADGSIILYDLVGEEI 129  Encephalitozoon cu...
3183237   66 sAKVTCIANFDEMY--AVGYADGSIRLWKDG-----ELLITLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVWDIVAETG 138  fission yeast
3121995   79 pAECTYLEAHKDTDLLAVGYADGVIKVWDLMSK---TVLLNFNGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVG 155  baker's yeast
12230773 142 LYRLKGHKDAITQALFLr---------------------------EKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEV 194  human
7300370  145 RARLSGHNAAITDAHFLqr------------------------lvDESIVVSCSKDTQIKFWNLETQFCFKTIVDNRTEV 200  fruit fly
17533163 138 MFRLHGHKESVTQMKFVr---------------------------GDRFIISTSKDSLIKFWSIASQSCFYTVMDSRNEI 190  Caenorhabditis ele...
19074072 130 RISYEG-NDICVEKFFSn----------------------------SKVVVAVCTDNTLRVWDLEDRHIKSVHMFEKALK 180  Encephalitozoon cu...
3183237  139 LFRLRGHKDQITKLLFItppskntaeetvvdtdidsgdmdvdsksSDSFLLSVGKDSFMKLWDLSIQHCVETHVDHQGEI 218  fission yeast
3121995  156 LYKLRSHKDSITGFWCQg----------------------------EDWLISTSKDGMIKLWDLKTHQCIETHIAHTGEC 207  baker's yeast
12230773 195 WGLVLLSeeKRLITGASDSELRVWDIaylqeiedpeepdpkkikgsspgiqdtleaedgAFETDEAPE-------DRILS 267  human
7300370  201 WALAFIG--NLMVAGAGESGMNVYRLrkhdgait-----------------etlesaveGLSIDDEDT-------ISPIS 254  fruit fly
17533163 191 YSMSLHRdeTVLVAATAELELLVFELnwkngaifeqe------------vkseepsakkATNDDEKEDdvlanmaNRYIT 258  Caenorhabditis ele...
19074072 181 DVFVMDE---EAVIFFRDGESTFYNL------------------------------------------------------ 203  Encephalitozoon cu...
3183237  219 WAMCVSPdaKRCLTAGTGSDVKVWEI---------------------------------SFPDDNNFT-------PTTKA 258  fission yeast
3121995  208 WGLAVKD--DLLITTGTDSQVKIWKL---------------------------------DIENDK-----------MGGK 241  baker's yeast
12230773 268 CRKAGSIMREGRDR--VVNLAVDKTGR--ILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKlhsskgEEEdPEV 343  human
7300370  255 VSNCGTIQRAGKGR--TVNLVTDPSER--VISCHGTNDLIENFYICTPDEVKKRLAKRLKKEKKVAEde---gSDE-AKL 326  fruit fly
17533163 259 TKLRGRVIRQSKGR--ALQLVATHDDR--FLVCVGADKVADVYRVFSETESAKRLTKKLKSAKRKATs----dTTTvNED 330  Caenorhabditis ele...
19074072 204 ----------------EDKTSRPFNKF------K------KLRNIKIKEEKIFIQSK----NKLHIY------------- 238  Encephalitozoon cu...
3183237  259 FQQLGTFTRQSRDR--PITLAYDVSNR--YVVFQAHDRLLEVFRLRSSAELEKILNR--RRRRKKSE------------- 319  fission yeast
3121995  242 LTEMGIFEKQSKQRglKIEFITNSSDKtsFFYIQNADKTIETFRIRKEEEIARGLKKREKRLKEKGL------TEEeIAK 315  baker's yeast
12230773 344 NVEMSLQDEIQR-VTNIKTSAKIKSFDLIHSPHGElKAVFL-----LQNNLVELYSLNP-SLPT-----PQPVRTSRITI 411  human
7300370  327 STEQSLSDEIKR-LESIRAKQKIKSIDVVLGQNQElRVLVS-----LANNSLCLYSLEA-SIKTrkatdPSAKLLRSLTR 399  fruit fly
17533163 331 DVAKDVTILVTR-IGEMVLPHKIKWIDVVRSVKTNeNTLIYkwyalLTDNTVHWVKMSIeTTSNs----VECDSVGNLDK 405  Caenorhabditis ele...
19074072 239 GVDKRDRIILKH-LETMKISDRYVDFDVTPDGGVL-----------FAAVDNCWECVEN--GKI-------------YSF 291  Encephalitozoon cu...
3183237  320 DVSITLKDEYEP-FALIRTTARASSVAWIPGNRTP--TLVTs----LQNNSIEVYALDVkSEGSaapltERASRISAIEI 392  fission yeast
3121995  316 SIKESYSSFILHpFQTIRSLYKIKSASWTTVSSSK-LELVLt----TSSNTIEYYSIPYeKRDPt---sPAPLKTHTIEL 387  baker's yeast
12230773 412 GGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCE---YALCSFFVPGDRQVVIGTKTGKLQLYDLASGNL 488  human
7300370  400 LGHQSEVRSVCFSNDSLAIGSGAGESFKFWDRDAMQCLRTVPTD---YILCSKFVPGDRYVLLGMKSGKLLIVDVAAADI 476  fruit fly
17533163 406 LGHREDVRALCVSSSSSLLASGGGNEVIVWSTHSLRSSLTLTDNdikDIVAVNFVPGDNYILTGGKNGEIGVFELSSAEL 485  Caenorhabditis ele...
19074072 292 GFHRNEILGFEVCEEKIITFSK--ESIIIWLVD-GKEIRKIGSIr--IKHGRCMCTWSSNIVVGRDAG----FSCYSILN 362  Encephalitozoon cu...
3183237  393 PGHRADVRTLALSANHDVILSGANGSLKLWNKKTTSCIRTIECG---YVLAASFINNDKCIVSAYKSGELEVYDIASSSL 469  fission yeast
3121995  388 QGQRTDVRSIDISDDNKLLATASNGSLKIWNIKTHKCIRTFECG---YALTCKFLPGGLLVILGTRNGELQLFDLASSSL 464  baker's yeast
12230773 489 LETID-AHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKD-ENSTQ-KR---LSVKQTRTLQLDEDVLCVSYSPNQK 562  human
7300370  477 VEEIP-AHEGELWSIAILPDQKGCVTGSGDTTVKIWTFELIDAgEGAAQtKV---LSLLHKNTLKLEETVLCLAVSPDMK 552  fruit fly
17533163 486 VETRK-AHTGAIWTIQNSPDNEGFITASADKTVRFWSFVLVTE---GSRkR----ISIKEQKVLELPDEALAASFSADGK 557  Caenorhabditis ele...
19074072 363 CELTR---EEIIGPVSSISSNADELLVGKDNVILFYDNTYMVS------------------RILEIENQISSIEAS--GA 419  Encephalitozoon cu...
3183237  470 IERIQ-AHDGAIWDLAVGHDGTYFATASADHTVKLWSLKSSFDfVPGTTrKVt-tLKLEQTRQIDFTDDVLAVKISPDGR 547  fission yeast
3121995  465 LDTIEdAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFKVENSlVPGTKnKFlpvLKLHHDTTLELTDDILCVRVSPDDR 544  baker's yeast
12230773 563 LLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQFV 642  human
7300370  553 YLAVGLLDATVKVFFLDTFKFYLSLYGHKLPVICLDISYDSNLIVTGSADRNVKVWGLNFGDCHRSIFAHDDSVMSVQFI 632  fruit fly
17533163 558 FLVVALLNNTCSVYFVNTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVWGLDFGDCHKSFHAHDDAVTSVLFC 637  Caenorhabditis ele...
19074072 420 LLCVGLLNSKVHIYSMDDLSLKVTLYGHALPVRSMQLSPDSSELLTCGADKTVKMWGTQFGECRKSFIG--DS-KCVEYL 496  Encephalitozoon cu...
3183237  548 FVAASLLDNTVKVYYLDSLKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQ 627  fission yeast
3121995  545 YLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFL 624  baker's yeast
12230773 643 P-KSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEEREMEREA 721  human
7300370  633 P-RTHMFFTCGKDGKVKQWDGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTLRMFERTDETIVLKDVQEEEREQ 711  fruit fly
17533163 638 PgEEQLFWSAGKDGKIKQWDAVKFIMVQVLDRHTLDIRCLAQFTNGSVMFSASHDKSIRCWEKTDEILIVEEREEVEREE 717  Caenorhabditis ele...
19074072 497 N-KDLFMFASGRVQYFKRY--EKLKEFRHYDSSLVKVRKDMMISCG-------R-FNIDLYSMDK----YELQKEGKDES 561  Encephalitozoon cu...
3183237  628 P-DTYNFFTCSKDREVRYWDGKSFDLILKLRGHHSEVWALAVGPT--FVVSGSHDHSIRLWEQGDDLVFLEEERERELEE 704  fission yeast
3121995  625 P-QSHNFFSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQVFLEEEKEKELEE 703  baker's yeast
12230773 722 EYE-ESVAKEDQPAVPG------ETQGDSYFTG---KKTIETVKAAERIMEAIELYREETAKMKEHKaic-----kaAGk 786  human
7300370  712 MEN-EQLATGEDNTVP-------LLPGLKMPS----RKTVGSEQSAESILECLEISKQFELEAEEK-------------- 765  fruit fly
17533163 718 EYEkKLIEEEDVVAGEN-------ADNEAGVAS---SKTSSSVVSAENIIQAVDIARNEKVQRQED-----------PG- 775  Caenorhabditis ele...
19074072 562 DEE----------------------------------EVIQTVSVVN--YKVYD---RFLTRLEELS------------- 589  Encephalitozoon cu...
3183237  705 QYEsTLVSSYENAEADGe-----VKDGDVAAVT---KQTIESLKDGEKILEAITIGIEDLDQEIQYRldl----lksPGk 772  fission yeast
3121995  704 QYEdTLLTSLEEGNGDDafkadaSGEGVEDEASgvhKQTLESLKAGERLMEALDLGIAEIEGLEAYNrdmklwqrkkLGe 783  baker's yeast
12230773 787 -eV-PLpsNPILMAYGsISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILK-LFNEFIQLG----SDVELICRCLFFL 859  human
7300370  766 ----PEl-HPLMQALQvKNPEDFLVSTLMRIRASDLEEALLLLPFSTVCEVLErLPTLLTQRP----DQLELLCRVTIFL 836  fruit fly
17533163 776 --HePH---PLIGAYNsKSLDHFIVDVVAKCRASDLDRTLLLVPLSYVADILL-AISSCTQQQ----YKAELCTHVAVYL 845  Caenorhabditis ele...
19074072 590 ------------NSFS-NENVKLFFDVLMDIDFCELDKFLCLMNSSDVIQVMN-VLYECINWN------VILVGRVFISL 649  Encephalitozoon cu...
3183237  773 arG-PR--NPILAHLG-VSAEEYVLNTFKKIRSSHLDDALLVLPFEHVLSLFR-FIDIWASRK----WSIPLVSRIIFFL 843  fission yeast
3121995  784 apIkPQg-NAVLIAVN-KTPEQYIMDTLLRIRMSQLEDALMVMPFSYVLKFLK-FIDTVMQNKtllhSHLPLICKNLFFI 860  baker's yeast
12230773 860 LRIHFGQITSNQM--LVPVIEKLRETTISKVSQVRDVIGFNMAGLDYLKRECEAKSEVMFFADATSHLEEKKRKRK--KR 935  human
7300370  837 FKVHMKPISAAKN--MKPLLVKLLSMLKRDVGQLRDVLGWNLHGLALLQTEVEQRDGVQLFREATQTRKKRDKKRReaSK 914  fruit fly
17533163 846 TRIHLSHITASSD--YVPIFEQMKSKMSEGVEKLRNVTGINLAALRLLATELEDREQVKKFAQIELGVEDPKKKRK--GR 921  Caenorhabditis ele...
19074072 650 VRLHRDICICHPR--FKIFLKGIIDKTEEIREQASGNEGKLLVKKSICMQETPDFE------------------------ 703  Encephalitozoon cu...
3183237  844 LRTYHRQLTTTVK--MRPLLNNIRSSLRGSLQEERSLIGYNAAGLSYLRHEWELTHNTS-LEDIDSTSLEVDGKKR--AF 918  fission yeast
3121995  861 IKFNHKELVSQKNeeLKLQINRVKTELRSALKSTEDDLGFNVQGLKFVKQQWNLRHNYEFVDEYDQQEKESNSARKr-VF 939  baker's yeast
12230773 936 EKLI 939  human
7300370  915 RRLQ 918  fruit fly
17533163 922 KAVL 925  Caenorhabditis elegans
19074072     ----      Encephalitozoon cuniculi
3183237  919 SNIV 922  fission yeast
3121995  940 GTVI 943  baker's yeast
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